Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1QHD

CRYSTAL STRUCTURE OF VP6, THE MAJOR CAPSID PROTEIN OF GROUP A ROTAVIRUS

Functional Information from GO Data
ChainGOidnamespacecontents
A0005198molecular_functionstructural molecule activity
A0019028cellular_componentviral capsid
A0019031cellular_componentviral envelope
A0019064biological_processfusion of virus membrane with host plasma membrane
A0039621cellular_componentT=13 icosahedral viral capsid
A0039626cellular_componentviral intermediate capsid
A0044423cellular_componentvirion component
A0044650biological_processadhesion of symbiont to host cell
A0046789molecular_functionhost cell surface receptor binding
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AHIS153
AHIS153
AHIS153
ACL502
ACL502
ACL502

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A 502
ChainResidue
AHIS153
AZN501
AZN501
AZN501
AHIS153
AHIS153

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 503
ChainResidue
AHOH874
AHOH874
AHOH874
AHOH890
AHOH890
AHOH890

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 508
ChainResidue
AASN266
AASN266
AASP286
AASP286
AHOH794
AHOH794

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 601
ChainResidue
AGLN268
AGLU379
AHOH652
AHOH668
AHOH767
AHOH789
AHOH845

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 602
ChainResidue
AGLN47
AASP62
AHOH681
AHOH779
AHOH783

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 603
ChainResidue
ATHR151
AGLU340
AHOH628
AHOH886

site_idZNB
Number of Residues1
DetailsTHE ZINC SITS ON A THREE-FOLD AXIS. THE ZINC BINDING SITE FORMED BY THREE SYMMETRICALLY-RELATED PLUS ONE WATER MOLECULE ON THE THREE-FOLD AXIS.
ChainResidue
AHIS153

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_04129, ECO:0000269|PubMed:11285213
ChainResidueDetails
AHIS153
AASN266
AASP286

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon