Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7BMJ

Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese, 5-fluoropyridine-2,4-dicarboxylic acid, and factor X substrate peptide fragment (39mer-4Ser)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2020-09-07
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.99990
Spacegroup nameP 1
Unit cell lengths49.350, 59.480, 95.540
Unit cell angles104.26, 91.51, 92.76
Refinement procedure
Resolution46.260 - 1.750
R-factor0.2224
Rwork0.221
R-free0.25120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jtc
RMSD bond length0.004
RMSD bond angle0.673
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]55.4201.780
High resolution limit [Å]1.7501.750
Rmerge0.1222.408
Number of reflections1935335049
<I/σ(I)>5.70.5
Completeness [%]96.695.7
Redundancy3.53.6
CC(1/2)0.9900.290
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP277200 mM sodium nitrate, 20% w/v PEG 3350, 1 mM manganese chloride, 18 mg/ml protein

219515

PDB entries from 2024-05-08

PDB statisticsPDBj update infoContact PDBjnumon