7BMJ
Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese, 5-fluoropyridine-2,4-dicarboxylic acid, and factor X substrate peptide fragment (39mer-4Ser)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.99990 |
Spacegroup name | P 1 |
Unit cell lengths | 49.350, 59.480, 95.540 |
Unit cell angles | 104.26, 91.51, 92.76 |
Refinement procedure
Resolution | 46.260 - 1.750 |
R-factor | 0.2224 |
Rwork | 0.221 |
R-free | 0.25120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jtc |
RMSD bond length | 0.004 |
RMSD bond angle | 0.673 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.420 | 1.780 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.122 | 2.408 |
Number of reflections | 193533 | 5049 |
<I/σ(I)> | 5.7 | 0.5 |
Completeness [%] | 96.6 | 95.7 |
Redundancy | 3.5 | 3.6 |
CC(1/2) | 0.990 | 0.290 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 200 mM sodium nitrate, 20% w/v PEG 3350, 1 mM manganese chloride, 18 mg/ml protein |