7B9B
Crystal structure of human 5' exonuclease Appollo APO form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-13 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 90.417, 90.417, 104.164 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.210 - 2.800 |
R-factor | 0.2683 |
Rwork | 0.266 |
R-free | 0.32100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5aho |
RMSD bond length | 0.003 |
RMSD bond angle | 0.529 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.210 | 2.950 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.180 | 2.130 |
Rpim | 0.040 | |
Number of reflections | 11188 | 1588 |
<I/σ(I)> | 11.8 | 1.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 25.3 | 25.3 |
CC(1/2) | 0.990 | 0.670 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 278 | 6% PEG20K -- 0.1M bicine pH 7.3 |