6VZL
Crystal structure of human PPARgamma ligand binding domain in complex with GW1929
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.849, 62.131, 119.116 |
Unit cell angles | 90.00, 102.17, 90.00 |
Refinement procedure
Resolution | 58.220 - 2.070 |
R-factor | 0.253 |
Rwork | 0.251 |
R-free | 0.28860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1prg |
RMSD bond length | 0.009 |
RMSD bond angle | 1.004 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.220 | 2.144 |
High resolution limit [Å] | 2.070 | 2.070 |
Rmerge | 0.051 | 1.374 |
Rmeas | 0.056 | |
Rpim | 0.022 | |
Number of reflections | 40606 | 3920 |
<I/σ(I)> | 13.59 | |
Completeness [%] | 98.8 | 97.88 |
Redundancy | 6.4 | 6.4 |
CC(1/2) | 0.999 | 0.727 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 293 | 0.1M MOPS, pH 7.4, 0.8M SODIUM CITRATE |