6VM9
T4H2 T cell receptor bound to HLA-A2 presenting gp100T2M peptide (IMDQVPFSV)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 64 |
Unit cell lengths | 129.744, 129.744, 113.440 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.700 - 2.900 |
R-factor | 0.2137 |
Rwork | 0.210 |
R-free | 0.25010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1tvb |
RMSD bond length | 0.002 |
RMSD bond angle | 0.489 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.950 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.097 | 0.882 |
Rmeas | 0.103 | 0.943 |
Rpim | 0.033 | 0.324 |
Number of reflections | 24229 | 1125 |
<I/σ(I)> | 24.2 | 1.7 |
Completeness [%] | 99.6 | 94.9 |
Redundancy | 9.6 | 7.1 |
CC(1/2) | 0.996 | 0.864 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 296 | 18% v/v PEG10000, 16% v/v glycerol, 250 mM Tris pH 8.5, 60 mM sodium chloride, seeded with crushed crystals |