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6NR0

SIRT2(56-356) with covalent intermediate between mechanism-based inhibitor Glucose-TM-1beta and 1'-SH ADP-ribose

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.3
Synchrotron siteALS
Beamline5.0.3
Temperature [K]100
Detector technologyCCD
Collection date2018-09-10
DetectorADSC QUANTUM 315r
Wavelength(s)0.9765
Spacegroup nameI 1 2 1
Unit cell lengths82.310, 76.840, 114.461
Unit cell angles90.00, 95.87, 90.00
Refinement procedure
Resolution63.690 - 2.450
R-factor0.223
Rwork0.220
R-free0.25620
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4x3o
RMSD bond length0.011
RMSD bond angle1.340
Data reduction softwareiMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.6932.538
High resolution limit [Å]2.4502.450
Rmerge0.0360.388
Rmeas0.0510.549
Number of reflections253802474
<I/σ(I)>13.332.06
Completeness [%]91.882.5
Redundancy22
CC(1/2)0.9990.722
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5293Mixed solution of 0.44 mM protein (in buffer of 20 mM Tris/HCl pH 7.5, 160 mM NaCl) 2.5 mM NAD+, 2.5 mM Glucose-TM-1beta with an equal volume of well solution of 2 M (NH4)2SO4, 80 mM Na Acetate/HCl pH 5.0

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PDB entries from 2024-05-15

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