Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6NEW

Apo structure of the activated truncation of Vav1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]100
Detector technologyCCD
Collection date2011-02-10
DetectorADSC QUANTUM 315
Wavelength(s)0.9774
Spacegroup nameP 21 21 21
Unit cell lengths36.925, 67.693, 178.560
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.700 - 2.500
R-factor0.202
Rwork0.199
R-free0.25700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)in-house Vav1-Rac1 complex
RMSD bond length0.010
RMSD bond angle1.130
Data reduction softwareXDS
Data scaling softwareAimless (0.5.29)
Phasing softwarePHASER (2.7.17)
Refinement softwareBUSTER
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.7002.600
High resolution limit [Å]2.5002.500
Rmerge0.1160.740
Rmeas0.1200.767
Rpim0.0320.199
Total number of observations228443
Number of reflections162481770
<I/σ(I)>22
Completeness [%]99.999.7
Redundancy14.114.7
CC(1/2)0.9990.916
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.329416-22% (v/v) Ethylene Glycol, 0.1M TRIS pH 7.3, and 15% (w/v) Polyethylene Glycol 8000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon