6NEL
4-(2-(4-fluorophenyl)-5-hydroxy-6-oxo-1,6-dihydropyridin-3-yl)benzoic acid bound to influenza 2009 pH1N1 endonuclease
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-03-21 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 88.250, 101.270, 66.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.635 - 2.000 |
R-factor | 0.2057 |
Rwork | 0.205 |
R-free | 0.22590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4m5r |
RMSD bond length | 0.011 |
RMSD bond angle | 0.540 |
Data scaling software | Aimless (3.3.22) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 66.530 | 66.530 | 1.780 |
High resolution limit [Å] | 1.680 | 5.330 | 1.680 |
Rmerge | 0.133 | 0.087 | 2.778 |
Rmeas | 0.156 | 0.098 | 3.267 |
Rpim | 0.064 | 0.041 | 1.325 |
Total number of observations | 187362 | ||
Number of reflections | 32780 | 1157 | 4647 |
<I/σ(I)> | 5.6 | ||
Completeness [%] | 96.5 | 98.3 | 95.2 |
Redundancy | 5.7 | 5.5 | 5.8 |
CC(1/2) | 0.992 | 0.989 | 0.044 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.7 | 293 | Crystals were formed by mixing in a 1:1 ratio the purified endonuclease protein (5 mg/ml) with crystallization buffer containing 200 mM MES pH 6.7, 27% PEG8000, 200 mM ammonium sulfate, 1 mM manganese chloride, 10 mM magnesium acetate, 10 mM taurine, and 50 mM sodium fluoride. Crystals matured to full size in one to two weeks at 20 degrees C. |