6MK3
Crystallographic solvent mapping analysis of DMSO bound to APE1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-08-06 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 46.583, 137.789, 45.243 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.818 - 1.478 |
R-factor | 0.1922 |
Rwork | 0.191 |
R-free | 0.21860 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 1.029 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.510 |
High resolution limit [Å] | 1.478 | 4.020 | 1.480 |
Rmerge | 0.060 | 0.040 | 0.410 |
Number of reflections | 48453 | 2394 | 2365 |
<I/σ(I)> | 14 | ||
Completeness [%] | 97.6 | 88 | 97.2 |
Redundancy | 4.9 | 3.5 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 100 mM MES, pH 6.0, 200 mM sodium chloride, 18-21% PEG4000 |