6CZC
Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with thymidine triphosphate (TTP) - promiscuous binding mode with disordered nucleoside
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-08-04 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.580, 105.370, 154.970 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.362 - 2.300 |
R-factor | 0.1881 |
Rwork | 0.184 |
R-free | 0.27260 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.031 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.380 | 46.380 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.120 | 0.033 | 0.529 |
Rmeas | 0.130 | 0.037 | 0.573 |
Rpim | 0.049 | 0.015 | 0.216 |
Number of reflections | 39064 | 702 | 3740 |
<I/σ(I)> | 12.7 | ||
Completeness [%] | 97.0 | 93 | 95.4 |
Redundancy | 6.6 | 6.2 | 6.1 |
CC(1/2) | 0.994 | 0.993 | 0.921 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 289.15 | 1.2 - 1.7M ammonium sulfate, 0.1M Tris pH 8 and 10 - 15% glycerol |