5WGG
Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-21 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0781 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 68.917, 153.766, 51.822 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.694 - 2.036 |
R-factor | 0.1908 |
Rwork | 0.189 |
R-free | 0.22500 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.509 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | autoSHARP |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.090 |
High resolution limit [Å] | 2.050 | 5.550 | 2.050 |
Rmerge | 0.068 | 0.055 | 0.498 |
Rmeas | 0.076 | 0.062 | 0.574 |
Rpim | 0.035 | 0.027 | 0.279 |
Total number of observations | 158323 | ||
Number of reflections | 35412 | 1725 | |
<I/σ(I)> | 11.3 | ||
Completeness [%] | 98.8 | 99.2 | 98.1 |
Redundancy | 4.5 | 4.9 | 3.9 |
CC(1/2) | 0.996 | 0.820 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.1M Tris-HCl 0.2M calcium acetate, 20% polyethylene glycol 3,000 |