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5BPQ

Crystal structure of the cysteine-rich domain of human Frizzled 4 - Crystal Form II

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2013-02-17
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9686
Spacegroup nameP 61
Unit cell lengths76.075, 76.075, 204.470
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution65.880 - 2.400
R-factor0.2058
Rwork0.204
R-free0.24290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5bpb
RMSD bond length0.005
RMSD bond angle1.075
Data reduction softwarexia2
Data scaling softwareAimless (0.1.29)
Phasing softwarePHASER (2.5.6)
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.37047.3702.490
High resolution limit [Å]2.4008.9802.400
Rmerge0.0460.0220.606
Rpim0.0260.0130.339
Total number of observations103121177311157
Number of reflections25975
<I/σ(I)>14.537.72.2
Completeness [%]99.595.399.4
Redundancy43.64.1
CC(1/2)0.9990.9990.814
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2940.1 M HEPES, pH 7.5, 0.1 M NaCl, 1.6 M ammonium sulfate

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PDB entries from 2024-05-15

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