[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,536 items for (author: ye & rd)

EMDB-19066:
TREK2 in OGNG/CHS detergent micelle with biparatopic inhibitory nanobody Nb6158
Method: single particle / : Smith KHM, Tucker SJ

EMDB-40825:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

PDB-8sx3:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

EMDB-37159:
Cryo-EM structure of NADPH oxidase 2 in complex with p22phox and EROS
Method: single particle / : Liang SY, Liu AJ, Liu YZ, Ye RD

EMDB-18639:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

EMDB-18649:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

EMDB-19002:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8qsq:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

PDB-8qtd:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

PDB-8r8k:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-44496:
Cryo-EM co-structure of AcrB with the CU032 efflux pump inhibitor
Method: single particle / : Su CC

EMDB-44500:
Cryo-EM co-structure of AcrB with the EPM35 efflux pump inhibitor
Method: single particle / : Su CC

EMDB-44501:
Cryo-EM co-structure of AcrB with the CU232 efflux pump inhibitor
Method: single particle / : Su CC

EMDB-44506:
Cryo-EM co-structure of AcrB with CU244
Method: single particle / : Su CC

PDB-9bfh:
Cryo-EM co-structure of AcrB with the CU032 efflux pump inhibitor
Method: single particle / : Su CC

PDB-9bfm:
Cryo-EM co-structure of AcrB with the EPM35 efflux pump inhibitor
Method: single particle / : Su CC

PDB-9bfn:
Cryo-EM co-structure of AcrB with the CU232 efflux pump inhibitor
Method: single particle / : Su CC

PDB-9bft:
Cryo-EM co-structure of AcrB with CU244
Method: single particle / : Su CC

EMDB-40674:
Subtomogram average of immature PhiKZ Major Capsid Protein from tubular arrays
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-17189:
Structure of the human neutral amino acid transporter ASCT2 in complex with nanobody 469
Method: single particle / : Canul-Tec J, Reyes N

EMDB-17192:
Complex of human ASCT2 with Syncytin-1
Method: single particle / : Khare S, Reyes N

EMDB-17193:
Complex of ASCT2 with Suppressyn
Method: single particle / : Khare S, Kumar A, Reyes N

EMDB-17194:
Heterotrimeric Complex of Human ASCT2 with Syncytin-1
Method: single particle / : Khare S, Reyes N

PDB-8oud:
Structure of the human neutral amino acid transporter ASCT2 in complex with nanobody 469
Method: single particle / : Canul-Tec J, Reyes N

PDB-8ouh:
Complex of human ASCT2 with Syncytin-1
Method: single particle / : Khare S, Reyes N

PDB-8oui:
Complex of ASCT2 with Suppressyn
Method: single particle / : Khare S, Kumar A, Reyes N

PDB-8ouj:
Heterotrimeric Complex of Human ASCT2 with Syncytin-1
Method: single particle / : Khare S, Reyes N

EMDB-41373:
E. coli MraY mutant-T23P
Method: single particle / : Orta AK, Li YE, Clemons WM

EMDB-18334:
Cryo-EM structure of the inward-facing FLVCR1
Method: single particle / : Weng TH, Wu D, Safarian S

EMDB-18335:
Cryo-EM structure of the inward-facing choline-bound FLVCR1
Method: single particle / : Weng TH, Wu D, Safarian S

EMDB-18336:
Cryo-EM structure of the inward-facing FLVCR2
Method: single particle / : Weng TH, Wu D, Safarian S

EMDB-18337:
Cryo-EM structure of the outward-facing FLVCR2
Method: single particle / : Weng TH, Wu D, Safarian S

EMDB-18339:
Cryo-EM structure of the inward-facing choline-bound FLVCR2
Method: single particle / : Weng TH, Wu D, Safarian S

EMDB-19009:
Cryo-EM structure of the inward-facing ethanolamine-bound FLVCR1
Method: single particle / : Weng TH, Wu D, Safarian S

PDB-8qcs:
Cryo-EM structure of the inward-facing FLVCR1
Method: single particle / : Weng TH, Wu D, Safarian S

PDB-8qct:
Cryo-EM structure of the inward-facing choline-bound FLVCR1
Method: single particle / : Weng TH, Wu D, Safarian S

PDB-8qcx:
Cryo-EM structure of the inward-facing FLVCR2
Method: single particle / : Weng TH, Wu D, Safarian S

PDB-8qcy:
Cryo-EM structure of the outward-facing FLVCR2
Method: single particle / : Weng TH, Wu D, Safarian S

PDB-8qd0:
Cryo-EM structure of the inward-facing choline-bound FLVCR2
Method: single particle / : Weng TH, Wu D, Safarian S

PDB-8r8t:
Cryo-EM structure of the inward-facing ethanolamine-bound FLVCR1
Method: single particle / : Weng TH, Wu D, Safarian S

EMDB-43811:
Structure of human calcium-sensing receptor in complex with chimeric Gq (miniGisq) protein in nanodiscs
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43836:
Consensus map of human CaSR-miniGisq complex in nanodiscs
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43837:
Local refinement map of CaSR extracellular domain in nanodisc-reconstituted human CaSR-miniGisq complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43840:
Local refinement map of CaSR transmembrane domain in nanodisc-reconstituted human CaSR-miniGisq complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43841:
Local refinement map of G protein in nanodisc-reconstituted human CaSR-miniGisq complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43897:
Consensus map of human CaSR-miniGis complex in nanodiscs
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43898:
Local refinement map of CaSR extracellular domain in nanodisc-reconstituted human CaSR-miniGis complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43899:
Local refinement map of CaSR transmembrane domain in nanodisc-reconstituted human CaSR-miniGis complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43900:
Local refinement map of G protein in nanodisc-reconstituted human CaSR-miniGis complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43901:
Structure of human calcium-sensing receptor in complex with chimeric Gs (miniGis) protein in nanodiscs
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more