[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 98 items for (author: mah & lee & ng)

EMDB-29883:
CLC-ec1 E202Y at pH 4.5 100mM Cl Turn
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

EMDB-29884:
CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

EMDB-29885:
CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Turn
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

EMDB-29890:
CLC-ec1 L25C/A450C/C85A at pH 4.5 100mM Cl Intermediate
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

EMDB-29899:
CLC-ec1 L25C/A450C/C85A at pH 4.5 100mM Cl Twist
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

PDB-8ga0:
CLC-ec1 E202Y at pH 4.5 100mM Cl Turn
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

PDB-8ga1:
CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Swap
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

PDB-8ga3:
CLC-ec1 R230C/L249C/C85A at pH 4.5 100mM Cl Turn
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

PDB-8ga5:
CLC-ec1 L25C/A450C/C85A at pH 4.5 100mM Cl Intermediate
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

PDB-8gah:
CLC-ec1 L25C/A450C/C85A at pH 4.5 100mM Cl Twist
Method: single particle / : Fortea E, Lee S, Argyos Y, Chadda R, Ciftci D, Huysmans G, Robertson JL, Boudker O, Accardi A

EMDB-29980:
Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils
Method: helical / : Balana JA, Nguyen AB, Saelices L, Pratt RM

PDB-8gf7:
Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils
Method: helical / : Balana JA, Nguyen AB, Saelices L, Pratt RM

EMDB-16433:
Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Method: single particle / : Sharma M, Meek RW, Armstrong Z, Blaza JN, Alhifthi A, Li J, Goddard-Borger ED, Williams SJ, Davies GJ

PDB-8c54:
Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Method: single particle / : Sharma M, Meek RW, Armstrong Z, Blaza JN, Alhifthi A, Li J, Goddard-Borger ED, Williams SJ, Davies GJ

EMDB-26855:
Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)
Method: single particle / : Ipsaro JJ, Adams DW, Joshua-Tor L

PDB-7ux9:
Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)
Method: single particle / : Ipsaro JJ, Adams DW, Joshua-Tor L

EMDB-27703:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

PDB-8dtk:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

EMDB-27943:
9H2 Fab-poliovirus 1 complex
Method: single particle / : Charnesky AJ

EMDB-27947:
9H2 Fab-Sabin poliovirus 3 complex
Method: single particle / : Charnesky AJ

EMDB-27948:
9H2 Fab-poliovirus 2 complex
Method: single particle / : Charnesky AJ

EMDB-27949:
9H2 Fab-Sabin poliovirus 3 complex
Method: single particle / : Charnesky AJ

EMDB-27950:
9H2 Fab-Sabin poliovirus 2 complex
Method: single particle / : Charnesky AJ

EMDB-27951:
9H2 Fab-Sabin poliovirus 1 complex
Method: single particle / : Charnesky AJ

PDB-8e8l:
9H2 Fab-poliovirus 1 complex
Method: single particle / : Charnesky AJ

PDB-8e8r:
9H2 Fab-Sabin poliovirus 3 complex
Method: single particle / : Charnesky AJ

PDB-8e8s:
9H2 Fab-poliovirus 2 complex
Method: single particle / : Charnesky AJ

PDB-8e8x:
9H2 Fab-Sabin poliovirus 3 complex
Method: single particle / : Charnesky AJ

PDB-8e8y:
9H2 Fab-Sabin poliovirus 2 complex
Method: single particle / : Charnesky AJ

PDB-8e8z:
9H2 Fab-Sabin poliovirus 1 complex
Method: single particle / : Charnesky AJ

EMDB-28915:
SIRT6 bound to an H3K9Ac nucleosome
Method: single particle / : Markert J, Whedon S, Wang Z, Cole P, Farnung L

PDB-8f86:
SIRT6 bound to an H3K9Ac nucleosome
Method: single particle / : Markert J, Whedon S, Wang Z, Cole P, Farnung L

EMDB-34806:
SARS-CoV-2 Delta Spike in complex with FP-12A
Method: single particle / : Chen X, Wu YM

EMDB-34807:
SARS-CoV-2 Delta Spike in complex with IS-9A
Method: single particle / : Mohapatra A, Wu YM

EMDB-34808:
SARS-CoV-2 Omicron BA.1 Spike in complex with IY-2A
Method: single particle / : Chen X, Mohapatra A, Wu YM

PDB-8hhx:
SARS-CoV-2 Delta Spike in complex with FP-12A
Method: single particle / : Chen X, Wu YM

PDB-8hhy:
SARS-CoV-2 Delta Spike in complex with IS-9A
Method: single particle / : Mohapatra A, Wu YM

PDB-8hhz:
SARS-CoV-2 Omicron BA.1 Spike in complex with IY-2A
Method: single particle / : Chen X, Mohapatra A, Wu YM

EMDB-25202:
Cryo-EM structure of Torpedo acetylcholine receptor in apo form
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

EMDB-25205:
Cryo-EM structure of Torpedo acetylcholine receptor in apo form with added cholesterol
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

EMDB-25206:
Cryo-EM structure of Torpedo acetylcholine receptor in complex with carbachol, desensitized state
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

EMDB-25207:
Cryo-EM structure of Torpedo acetylcholine receptor in complex with d-tubocurarine
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

EMDB-25208:
Cryo-EM structure of Torpedo acetylcholine receptor in complex with d-tubocurarine and carbachol
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

PDB-7smm:
Cryo-EM structure of Torpedo acetylcholine receptor in apo form
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

PDB-7smq:
Cryo-EM structure of Torpedo acetylcholine receptor in apo form with added cholesterol
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

PDB-7smr:
Cryo-EM structure of Torpedo acetylcholine receptor in complex with carbachol, desensitized state
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

PDB-7sms:
Cryo-EM structure of Torpedo acetylcholine receptor in complex with d-tubocurarine
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

PDB-7smt:
Cryo-EM structure of Torpedo acetylcholine receptor in complex with d-tubocurarine and carbachol
Method: single particle / : Rahman MM, Basta T, Teng J, Lee M, Worrell BT, Stowell MHB, Hibbs RE

EMDB-30381:
Cryo-EM density of SARS-CoV-2 spike protein
Method: single particle / : Ho M, Chang Y, Wang C, Wu Y, Huang H, Lee K, Chen T, Lo JM, Chen X, Ma C

EMDB-23400:
SARS-CoV-2 Spike Protein Trimer bound to DH1043 fab
Method: single particle / : Gobeil S, Acharya P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more