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Theoretical models

... OF THE MU OPIOID RECEPTOR IN A MEMBRANE AQUEOUS SYSTEM Y.ZHANG,Y.Y.SHAM,R.RAJAMANI,J.GAO,P.S.PORTOGHESE DisplayDownload ... 1VRJ, CONTAIN THE UPPER 5 AND RIGHT 3 MONOMERS RESPECTIVELY. Y.Y.GUO,F.BLOCKER,F.XIAO,P.GUO DisplayDownload 1z04LACTOSE OPERON REPRESSOR ...

List of Publications

... M., Usui, T., Kudou, T., Iwasaki, Y., Fukuoka, K., Takahashi, N., Uehara, Y., Oiso, Y. BMC Endocrine Disorders 15: 66 (2015) [doi ... Ulrich, E.L., Akutsu, H., Doreleijers, J.F., Harano, Y., Ioannidis, Y.E., Lin, J., Livny, M., Mading, S., Maziuk, D ...

[wwPDB] Carbohydrate Remediation

... 7 in the atom_site coordinates section has an asym ID ‘Y’ for the 1st instance of single-monosaccharide, NAG bound to ASN ... 61 of protein chain ‘A’. The ‘Y’ value is unique for this monosaccharide. The additional chain ID (_atom ...

Cite Us / Terms and Conditions

... comparison and classification of ligand-binding surfaces in proteins. Murakami, Y., Kinoshita, K., Kinjo, A.R., Nakamura, H. ... electrostatic potential and molecular surface shape Kinoshita, K., Murakami, Y., Nakamura, H. Nucleic Acids Res. 35: W398-402 ...

[wwPDB] CASP16 Call for Targets

... Halfon M, Schneidman-Duhovny D, Zhu S, Yin R, Sun Y, Shen Y, Maszota-Zieleniak M, Bojarski KK, Lubecka EA, Marcisz M, ... R, Zieba K, Sieradzan AK, Czaplewski C, Kobayashi S, Miyakawa Y, Kiyota Y, Takeda-Shitaka M, Olechnovic K, Valancauskas L, Dapkunas J, ...

PDBML-extatom

... y>38.534y> y_esd xsi:nil="true" /> -1.962 ... y>38.513y> y_esd xsi:nil="true" /> -2.159 ...

REST interface

... BU assembly id, specify in the form of xxxx.y, where xxxx is the PDBID and y the assembly id - type: file format - version: file ... BU assembly id, specify in the form of xxxx.y, where xxxx is the PDBID and y the assembly id - type: file format - version: ...

Customizing the PDBj web interface

... -order the panels on the screen. To move a panel over the y-axis, hover over the title of a panel (this panel can be ... be shown as a preview as you move the panel along the y-axis. Once you have found your ideal position of the panel, simple ...

eF-site

... follows: Action Window, Linux Mac OS X rotate around X,Y axes left drag drag rotate around Z axis Shift + ... right drag Shift + command + drag translate along X,Y axes right drag command + drag translate along Z axis (zoom in ...

Protein Globe

... digit (x) of xy specifies the land color, and the second digit(y) the sea. If there is no x, then only specify ... y (0-9). For example, by specifying 's=55', you have the dark ...

[wwPDB] Paper Published on NMR Restraint Validation

... , Genji Kurisu, Jeffrey C Hoch, Gaetano T Montelione, Geerten W Vuister, Jasmine Y Young (2024) Structure 32, 1–14: doi: 10.1016/j.str.2024 ...

[wwPDB] Enhanced Validation of Small-Molecule Ligands and Carbohydrates

... , Jeffrey C. Hoch, Genji Kurisu, Sameer Velankar, Stephen K. Burley, and Jasmine Y. Young (2021) Structure doi: 10.1016/j.str.2021.02.004 [ wwPDB ...

Celebrating 10 Years of the wwPDB

... crystal structure from Africa is released in the PDB. 1ydk: DC Kuhnert, Y Sayed, S Mosebi, M Sayed, T Sewell, HW Dirr. Tertiary interactions stabilise ...

[wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations

... . Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan ...

[wwPDB] Paper Published on NextGen Archive

... W. Piehl, James Smith, Ahsan Tanweer, Mihaly Varadi, John D. Westbrook, Jasmine Y. Young, Ardan Patwardhan, Kyle L. Morris, Jeffrey C. Hoch, Genji Kurisu, Sameer ...

[wwPDB] Obituary for John Westbrook

... structures (instead of split entries with atomic coordinates distributed among different x,y,z files). In 2019, mandatory submission of PDBx/mmCIF format files for ...

Molmil user manual

... the Ctrl button and the mouse left button) Translation to the X/Y direction (top/bottom/left/right direction of the display surface) Translation of ...

[wwPDB] Preprint Published on NMR Restraint Validation

... , Genji Kurisu, Jeffrey C Hoch, Gaetano T Montelione, Geerten W Vuister, Jasmine Y Young (2024) bioRxiv 2024.01.15.575520; doi: 10.1101/2024.01 ...

[wwPDB] Remediation of crystal structures deposited in non-standard coordinate frames

... modern graphics and refinement software. Each re-versioned entry has atom x,y,z coordinates transformed into the standard crystallographic frame. Non-crystal symmetry matrices ...

[wwPDB] Preprint Published on CryoEM Archiving and Validation Recommendations

... . Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan ...

[wwPDB] Preprint Published on NextGen Archive

... W. Piehl, James Smith, Ahsan Tanweer, Mihaly Varadi, John D. Westbrook, Jasmine Y. Young, Ardan Patwardhan, Kyle L. Morris, Jeffrey C. Hoch, Genji Kurisu, Sameer ...

[wwPDB] New Publication: PDBx/mmCIF Ecosystem

... /mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology John D. Westbrook, Jasmine Y. Young, Chenghua Shao, Zukang Feng, Vladimir Guranovic, Catherine L. Lawson, Brinda Vallat ...

A paper describing PDBj's new tools and activities published in Protein Science.

... (PDBj) Kinjo, A.R., Bekker, G.-J., Wako, H., Endo, S., Tsuchiya, Y., Sato, H., Nishi, H., Kinoshita, K., Suzuki, H., Kawabata, T., Yokochi, M ...

[wwPDB] Coming July 29: Improved Carbohydrate Data at the PDB

... , to ensure continued Findability of 118 common oligosaccharides (e.g., sucrose, Lewis Y antigen), we have expanded the Biologically Interesting molecule Reference Dictionary (BIRD) that ...

To tell whether a PDB entry type is non-PDB format compatible or not - FAQ

... services to extract this field. When the value of this field is "Y", it means that the entry is PDB format compatible (i.e. a ...

 

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