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PDBID:9pmm
Status:HPUB -- hold until publication
Title:Crystal structure of C. elegans PUF-3 in complex with RNA I-1
Authors:Zhang, Y., Hall, T.M.T.
Deposition date:2025-07-18
PDBID:9pn1
Status:HPUB -- hold until publication
Title:Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A mutant of cellular retinol binding protein II complex with 15-cis-retinal
Authors:Ehyaei, N., Silva, K., Bingham, C., Geiger, J.H., Borhan, B.
Deposition date:2025-07-18
Sequence:

>Entity 1


TRDANGTWEMESNENFEGWMKALDIDFALRKIAVRLTQTLVIDQDGDNFKVKCTSTFWNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKKWIEGDKLYLELTCGDQVCRQVFKKK
PDBID:9vxe
Status:HPUB -- hold until publication
Title:The cryo-EM structure of NapIM_type1 amyloid beta 42 fibril.
Authors:Zhao, Q.Y., Cui, B.Y., Liu, C.
Deposition date:2025-07-18
PDBID:9s0m
Status:HPUB -- hold until publication
Title:Crystal structure of SARS-CoV-2 NSP14 in complex with compound 1
Authors:Georgiou, I., Robinson, C., OByrne, S., Matsuda, A., Grygier, P., Smith, C., ONeill, S., Ahmad, S., Post, J., Groenewold, G.J.M., Urakova, N., Wanningen, P., Kresik, L., Plewka, J., Delpal, A., See, K., Eadsworth, T., Paul, M., Lis, K., Decroly, E., Singh Saikatendu, K., Chang, E., Snijder, E.J., Czarna, A., Pyrc, K., Scott, D., Gilbert, I.
Deposition date:2025-07-16
PDBID:9vw8
Status:HPUB -- hold until publication
Title:Cryo-EM structure of E.coli transcription initiation complex with Escherichia phage Mu late transcription activator C using the PI promoter DNA
Authors:Lin, W.
Deposition date:2025-07-16
PDBID:9rze
Status:AUTH -- processed, waiting for author review and approval
Title:State 2 MAP 3 RNA Pol II activated elongation complex with SETD2 bound to proximal upstream H3
Authors:Walshe, J.L., Ochmann, M., Dienemann, C., Cramer, P.
Deposition date:2025-07-15
PDBID:9ryj
Status:HOLD -- hold until a certain date
Title:Aquifex aeolicus lumazine synthase 11-pentamer cage in complex with C5-symmetrized riboflavin synthase C-termini
Authors:Koziej, L., Azuma, Y.
Deposition date:2025-07-15
Release date:2026-07-15
PDBID:9ryh
Status:HPUB -- hold until publication
Title:Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with SRI1.66 at room temperature
Authors:Lambert, M.C., Aledavood, E., Born, J., Fairhead, M., Gil, C., Koekemoer, L., Martinez, A., Mikolajek, H., Ramos, S., Sanchez-Weatherby, J., Sandy, J., Thompson, A.J., von Delft, F., Walsh, M., Wang, S., Williams, E.P., Hough, M.A.
Deposition date:2025-07-15
PDBID:9ryt
Status:HPUB -- hold until publication
Title:Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with SRI1.97 at room temperature
Authors:Lambert, M.C., Aledavood, E., Born, J., Fairhead, M., Gil, C., Koekemoer, L., Martinez, A., Mikolajek, H., Ramos, S., Sanchez-Weatherby, J., Sandy, J., Thompson, A.J., von Delft, F., Walsh, M., Wang, S., Williams, E.P., Hough, M.A.
Deposition date:2025-07-15
PDBID:9rzb
Status:HPUB -- hold until publication
Title:Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with SRI1.112 at room temperature
Authors:Lambert, M.C., Aledavood, E., Born, J., Fairhead, M., Gil, C., Koekemoer, L., Martinez, A., Mikolajek, H., Ramos, S., Sanchez-Weatherby, J., Sandy, J., Thompson, A.J., von Delft, F., Walsh, M., Wang, S., Williams, E.P., Hough, M.A.
Deposition date:2025-07-15
PDBID:9rzi
Status:HPUB -- hold until publication
Title:Crystal structure of Amborella trichopoda ACCO2 in complex with Fe and ACC
Authors:Zhang, Z., Schofield, C.J.
Deposition date:2025-07-15
PDBID:9rzk
Status:HPUB -- hold until publication
Title:RAPTA-6MB (Ruthenium[II]-hexamethylbenzene-phosphaadamantane) cancer drug binding to the nucleosome core
Authors:Adhireksan, Z., Davey, C.A.
Deposition date:2025-07-15
PDBID:9rzn
Status:HPUB -- hold until publication
Title:RAPTA-3IB (Ruthenium[II]-1,3,5-triisopropylbenzene-phosphaadamantane) cancer drug binding to the nucleosome core
Authors:Adhireksan, Z., Davey, C.A.
Deposition date:2025-07-15
PDBID:9ry6
Status:HPUB -- hold until publication
Title:Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with SRI1.65 at room temperature
Authors:Lambert, M.C., Aledavood, E., Born, J., Fairhead, M., Gil, C., Koekemoer, L., Martinez, A., Mikolajek, H., Ramos, S., Sanchez-Weatherby, J., Sandy, J., Thompson, A.J., von Delft, F., Walsh, M., Wang, S., Williams, E.P., Hough, M.A.
Deposition date:2025-07-14
PDBID:9ry3
Status:HPUB -- hold until publication
Title:RAPTA-B (Ruthenium[II]-benzene-phosphaadamantane) cancer drug binding to the nucleosome core
Authors:Adhireksan, Z., Davey, C.A.
Deposition date:2025-07-14
PDBID:9rya
Status:HPUB -- hold until publication
Title:RAPTA-3MB (Ruthenium[II]-1,3,5-trimethylbenzene-phosphaadamantane) cancer drug binding to the nucleosome core
Authors:Adhireksan, Z., Davey, C.A.
Deposition date:2025-07-14
PDBID:9pjf
Status:HPUB -- hold until publication
Title:GII.4 Human Norovirus 3CL protease bound to compound 27
Authors:Campbell, A.C., Opel-Reading, H.K., Krause, K.L.
Deposition date:2025-07-14
PDBID:9rxv
Status:HPUB -- hold until publication
Title:RAPTA-T (Ruthenium[II]-toluene-phosphaadamantane) cancer drug binding to the nucleosome core
Authors:Adhireksan, Z., Muhammad, R., Davey, C.A.
Deposition date:2025-07-13
PDBID:9vui
Status:HPUB -- hold until publication
Title:Cryo-EM structure of the human measles virus RNA-dependent RNA polymerase complex bound to viral protein C
Authors:Du, T., Wang, J., Wu, S., Ru, H.
Deposition date:2025-07-13
PDBID:9rxu
Status:HPUB -- hold until publication
Title:RAPTA-C (Ruthenium[II]-cymene-phosphaadamantane) cancer drug binding to the nucleosome core
Authors:Ong, M.S., Wu, B., Davey, C.A.
Deposition date:2025-07-12
PDBID:9rxl
Status:HPUB -- hold until publication
Title:SARS-CoV-2 nucleocapsid C-terminal domain in complex with BCY00018176
Authors:Brear, P., Lulla, A., Dods, R., Bezerra, G.A., Hyvonen, M.
Deposition date:2025-07-11
PDBID:9rxj
Status:AUTH -- processed, waiting for author review and approval
Title:Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with SRI1.45 at room temperature
Authors:Lambert, M.C., Aledavood, E., Born, J., Fairhead, M., Gil, C., Koekemoer, L., Martinez, A., Mikolajek, H., Ramos-Inza, S., Sanchez-Weatherby, J., Sandy, J., Thompson, A.J., von Delft, F., Walsh, M., Wang, S., Williams, E.P., Hough, M.A.
Deposition date:2025-07-11
PDBID:9pj0
Status:HPUB -- hold until publication
Title:The structure of oxidized rat cytochrome c (K7Q) at 1.94 angstroms resolution
Authors:Brunzelle, J.S., Vaishnav, A., Edwards, B.F.P., Huttemann, M.
Deposition date:2025-07-11
PDBID:9pip
Status:HPUB -- hold until publication
Title:Cryo-EM Structure of a Transcription Elongation Complex Engaged with a Negatively Supercoiled Plasmid Template (Conformation 1)
Authors:Zhang, M., Canari-Chumpitaz, C., Bustamante, C.
Deposition date:2025-07-11
Sequence:

>Entity 1


(DG)(DG)(DG)(DC)(DT)(DA)(DC)(DC)(DT)(DC)(DT)(DC)(DC)(DA)(DT)(DG)(DA)(DC)(DG)(DG)(DC)(DG)(DA)(DA)(DT)(DA)(DC)(DC)(DC)

>Entity 2


(DG)(DG)(DG)(DT)(DA)(DT)(DT)(DC)(DG)(DC)(DC)(DG)(DT)(DG)(DT)(DA)(DC)(DC)(DT)(DC)(DT)(DC)(DC)(DT)(DA)(DG)(DC)(DC)(DC)

>Entity 3


GCAUUCAAAGCGGAGAGGUA

>Entity 4


MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLEVLFQ

>Entity 5


MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE

>Entity 6


MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE

>Entity 7


MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAEL
PDBID:9piq
Status:HPUB -- hold until publication
Title:Cryo-EM Structure of a Transcription Elongation Complex Engaged with a Negatively Supercoiled Plasmid Template (Conformation 2)
Authors:Zhang, M., Canari-Chumpitaz, C., Bustamante, C.
Deposition date:2025-07-11
Sequence:

>Entity 1


(DG)(DG)(DG)(DC)(DT)(DA)(DC)(DC)(DT)(DC)(DT)(DC)(DC)(DA)(DT)(DG)(DA)(DC)(DG)(DG)(DC)(DG)(DA)(DA)(DT)(DA)(DC)(DC)(DC)

>Entity 2


(DG)(DG)(DG)(DT)(DA)(DT)(DT)(DC)(DG)(DC)(DC)(DG)(DT)(DG)(DT)(DA)(DC)(DC)(DT)(DC)(DT)(DC)(DC)(DT)(DA)(DG)(DC)(DC)(DC)

>Entity 3


GCAUUCAAAGCGGAGAGGUA

>Entity 4


MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLEVLFQ

>Entity 5


MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE

>Entity 6


MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE

>Entity 7


MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAEL

245011

PDB entries from 2025-11-19

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