A paper regarding Molmil, a molecular viewer developed by PDBj, has been published.

A special WEB site and movies for Coronavirus 3D structure are now available. ... things – Molecules of COVID-19”. Using Molmil, we show 3D structures of a virion, spike proteins, receptors and antibodies, mutations of delta variant, antibody cocktail ...

... on the PDBj Mine search service? A) Using PDBj Mine, you can do Quick search, Advanced search and SQL ...

... available on how to use various search services at PDBj? A) Click on the "Help" or "?" link in the Search panel from the ...

... functions in Data-out activities at Protein Data Bank Japan (PDBj) Kinjo, A.R., Bekker, G.-J., Wako, H., Endo, S., Tsuchiya, Y., Sato, H ...

In addition to fasta sequence information ('fasta_seq_data/PDBID_seq.txt') for each PDB entry, a fasta file for all the sequence information ('all_fasta_sequence.txt.gz') is now available from the PDBj ftp site.

... the first list of Global Core Biodata Resources (GCBRs)—a collection of 37 resources whose long term funding and ... funding. This first collection of GCBRs were selected through a rigorous two-stage process open to biodata resources globally (see ...

... format; Gutmanas et al. (2015) NMR Exchange Format: a unified and open standard for representation of NMR restraint data ... existing directories “nmr_restraints” and “nmr_chemical_shifts”. A standardized naming convention for NMR unified data will also ...

... of Michael's key discoveries is of the Rossmann fold, a structural motif commonly found in enzymes that bind to dinucleotide ... new therapeutics to treat and prevent viral infections. Michael was a member of the wwPDB advisory committee for four years, ...

... Institute (EMBL-EBI). Since then, they have collaborated on a wide range of issues including data deposition, annotation, and validation ... the Worldwide Protein Data Bank's mission to maintain a single public archive of macromolecular structural data from all ...

... means that the entry is PDB format compatible (i.e. a conventional type compatible with the PDB format). If it is "N ... (recently created type released with a PDB bundle, which includes multiple PDB formatted files and a Chain ID mapping information file). ...

... early three-dimensional structures by X-ray crystallography ushered in a new era in biology-one driven by the intimate ... that PDB structures are discoverable and interpretable by users with a wide range of backgrounds and interests. wwPDB eagerly awaits ...

... structure factor data with two datasets(x-ray/neutron)? A) You can generate a structure factor data with the following procedures. (original.mtz contains as follows ...

... Public Domain Dedication wwPDB manages the PDB Core Archives as a public good according to the FAIR Principles. In support ... , wwPDB has replaced its historical data access license with a standard open source license from Creative Commons, the CC0 ...

Q) Format Conversion: Do you provide a service to convert the file format between PDB format and PDBx/mmCIF? A) By using our Format Conversion web service, you can convert the file format between PDB format and PDBx/mmCIF. [Back to the question list]

On 24th Sep, we will hold a luncheon seminar at the 57th Annual Meeting of the Biophysical Society of ... to 29th Aug 16:00 (JST). The participants are decided by drawing. * A "Seminar Numbered Ticket" distribution desk will be set up from around 08 ...

... at the 29th Science Festa Osaka, which is a scientific event for young people. The exhibition day of our booth is ...

PDBj has released a new service 'Chemie search'. And the 'search bar' is modified and allows you to more quickly find the resource or service you're looking for.

Structural Life Science - 7th International Conference on Structural Genomics (ICSG2013-SLS) will be held in Sapporo, Japan, July 29th - August 1st, 2013. PDBj will introduce activities of PDBj and wwPDB in a booth display.

We start a Molmil service to display eF-site electrostatic molecular surfaces.

With this week's update, the PDB archive has passed the milestone of 150,000 entries, and now contains a total of 150,145. (wwPDB news)

PDB Certified as a Trustworthy Data Repository (wwPDB news)

Depositing a Structure? Include Your ORCiD (wwPDB news)

... 2018 (Sun) (JST). The venue is around Odaiba, Tokyo, Japan. We exhibit a booth in this event. Exhibition date and time: - 10th Nov 2018 (Sat ...

PDBj has started a service to link each PDBID to the database for Intrinsic Disordered proteins, IDEAL, which is developed by Nagoya University group.