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In this page, we refer to basic usage of PDBj. [Search entries by PDB ID] If you know the PDB ID which you want to get information, you can use the PDBj Mine. The procedure is described below. 1. At the top of the page you can find a search field. 2. ...

Data Deposition

PDB Deposition wwPDB deposition & annotation (D&A) system is a new deposition tool developed by the wwPDB partners. It supports X-ray, EM and NMR structures. wwPDB Deposition tool : http://deposit-pdbj.wwpdb.org/deposition/ (PDBj) ADIT-NMR ...

The PDBj Mine2 relational database (RDB) now integrates the summary data of SIFTS developed by PDBe and UniProt.

The PDBj Mine2 relational database (RDB) now integrates the summary data of SIFTS developed by PDBe and UniProt. By combining PDBj Mine2 and SIFTS, the user can easily retrieve, using SQL, various annotations of protein sequences in the PDB such as the ...

SIFTS

What is SIFTS? SIFTS*1 (Structure integration with function, taxonomy and sequence) is an up-to-date resource for residue-level mapping between UniProt and PDB entries. The resource also provides residue-level annotation from the IntEnz, GO, Pfam, ...

Derived databases

eF-site eF-site (electrostatic-surface of Functional site) is a database for molecular surfaces of proteins' functional sites, displaying the electrostatic potentials and hydrophobic properties together on the Connolly surfaces of the active sites, ...

Zika Virus Structure Released ( wwPDB News )

Zika Virus Structure Released (wwPDB News)

wwPDB Deposition, Annotation, and Validation System To Support Suppression of Entry Author Lists and Titles ( wwPDB News )

wwPDB Deposition, Annotation, and Validation System To Support Suppression of Entry Author Lists and Titles (wwPDB News)

AutoDep, ADIT-NMR, EMDep Deposition Systems to Be Retired, Effective September 30 th 2016 ( wwPDB News )

AutoDep, ADIT-NMR, EMDep Deposition Systems to Be Retired, Effective September 30th 2016 (wwPDB News)

wwPDB Deposition System: Getting Started

Please refer to Deposition Tutorial at wwPDB site.

Updated X-ray Validation Reports for Archived PDB Structures Now Available ( wwPDB News )

Updated X-ray Validation Reports for Archived PDB Structures Now Available (wwPDB News)

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Coming Soon: New NMR and 3DEM Validation Reports for Archived PDB Structures ( wwPDB News )

Coming Soon: New NMR and 3DEM Validation Reports for Archived PDB Structures (wwPDB News)

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The new version (4.5) of jV molecular viewer provided by PDBj is now available. From this version, it can load and save in mmCIF format for small molecules (chem_comp mmCIF).

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Coming soon: Updated X-ray Validation Reports for Archived PDB Structures ( wwPDB News )

Coming soon: Updated X-ray Validation Reports for Archived PDB Structures (wwPDB News)

wwPDB Deposition Annotation System Now Available for NMR and 3DEM Structures ( wwPDB News )

wwPDB Deposition & Annotation System Now Available for NMR and 3DEM Structures (wwPDB News)

news on 2016-1-8

jV 4.4.5, signed with updated certification, has released. The certification used to sign jV 4.4.4 will expire on Jan. 21, 2016. After expired, it doesn't work as applet. So we recommend for all administrator of web servers that include jV applet pages to ...

Protein Globe

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The Protein Globe service has been discontinued from January 2016.

The Protein Globe service has been discontinued from January 2016.

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PDB entries from 2024-05-01

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