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The announcement of PDB50 Anniversary Symposum in Asia PDBj poster prize winner

PDBj successfully organized the PDB 50th Anniversary Symposium in Asia (online) on November, 24, 2021 with active ...

News on 2004-12-10

PDBj starts the following two new services: Structure Navigator, a tool for querying the PDB using structure similarity, and GASH, a robust structure alignment program.

Protein Data Bank 50th Anniversary Virtual Issue: Featured structural articles from The Journal of Biochemistry were released

... (JB). In this virtual issue, we celebrate the 50th anniversary of the PDB by highlighting the top 10 articles with higher citation numbers and the ...

Some hostnames have been deprecated

... sequence) promode.pdbj.org Promode Elastic (Database of normal mode analysis of PDB data)

[wwPDB] Submit Abstracts for PDB50 by March 15

Throughout 2021, the wwPDB will be celebrating the 50th anniversary of the PDB archive (wwpdb.org/pdb50). The inaugural symposium will be held virtually on ...

Announcement: Experimental Data Release Policy Clarification

Announcement: Experimental Data Release Policy Clarification Effective February 6, 2013, coordinates and experimental data deposited in the PDB will follow the same release status. ( wwPDB News... ) Questions should be sent to info@wwpdb.org.

[wwPDB] ModelCIF Extension for Computed Structure Models

... now available. The PDBx/mmCIF data standard underpins the Protein Data Bank (PDB) Core Archive, which is jointly managed by the worldwide Protein Data Bank ...

News on 2010-10-06

Effective December 6, 2010, deposition of chemical shift data will be mandatory when submitting NMR entries to the PDB. ( more... )

[wwPDB] Poster Prize Awarded at The Biophysical Society Meeting

... . Individual sponsorships are also available. Consider supporting the next 50 years of PDB's spirit of openness, cooperation, and education with a donation to the ...

[wwPDB] Small Angle Scattering News

... aimed to test and benchmark different approaches for modeling SAS profiles from PDB coordinates has been published: A round-robin approach provides a detailed assessment ...

News on 2007-04-25

The wwPDB (www.wwpdb.org) has collaborated on a project to remediate the PDB archive and create a new set of corrected files, the test data of which are now released.

News on 2010-12-06

Deposition of chemical shift data has become mandatory when submitting NMR entries to the PDB. ( more... )

[wwPDB] Announcement of mandatory mmCIF submission published in Acta Cryst D

A new publication in Acta Cryst D announces the mandatory submission of PDBx/mmCIF to the PDB for crystallographic depositions. (wwPDB news)

Newsletter / Public Relations Resources

... (6 pages) - 日本語 2021 Calendar for celebrating 50th anniversary of PDB - - English A4 size, starts from Sunday (36MB) A4 size, starts from Monday ...

News on 2007-05-21

PDBj has started the following two new services: EM Navigator, a browser for searching the electron microscopy structures and XQuad (XQuery Advisor), a advisory tool for creating XQuery for searching the PDB data.

[wwPDB] Deprecation of FTP File Download Protocol in the PDB Archive

The FTP protocol for file downloads has been losing popularity over the years in favor of HTTP/S. There are many advantages of HTTP/S including speed, statelessness, security (HTTPS), and better support. Importantly during the past 2-3 years the main web ...

News on 2009-10-09

... ). This update is simultaneously made at every member of the wwPDB: RCSB-PDB, PDBe, and PDBj. On October 14, 2009, we will start to use ...

News on 2010-12-22

The number of biomacromolecular structures available in the PDB archive now exceeds 70,000 .( more... )

News on 2006-02-27

Links to 3D-insight, GDB, KEGG are added to each result of the PDB browser (xPSSS).

Remediation of Structure Factor Data and Release Plan

... 1000. These files will be available from ftp://ftp.pdbj.org/pub/pdb/data/structures/all/structure_factors/. Questions should be sent to info@wwpdb ...

Explore wwPDB-standardized electron density maps via PDBj EDMap

... files are available from our FTP site (ftp://ftp.pdbj.org/pub/pdb/validation_reports/) along with the validation reports. In addition, users can also ...

[wwPDB] Backbone Annotation and Standardization of Peptide Residues is Now Live

... have been updated accordingly. This improves the Findability and Interoperability of the PDB data and opens up new opportunities to use the updated peptide residue ...

CIF tree tool

... can be seen with the PDBx/mmCIF files with PDBj's Mine PDB Explorer service. Besides PDBx/mmCIF other STAR formatted files should also work ...

News on 2011-01-12

From January 15, 2011(JST), the wwPDB will resume the practice of providing advance notification of PDB entries that are about to be released in the following week.( wwPDB News... )

News on 2004-04-13

Functional Details Page is added in each result of the PDB browser (xPSSS).

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