Educational Service eProtS eProtS (Encyclopedia of Protein Structures) is a dictionary with pictures of the protein three-dimensional structures, for understanding the tertiary structures and the biological functions for several selected protein molecules that are ... |
Announcement: Map Volume Deposition to EMDB Will Be Mandatory for PDB Depositions of 3DEM models Starting September 6th, 2016 ( wwPDB News ) Announcement: Map Volume Deposition to EMDB Will Be Mandatory for PDB Depositions of 3DEM models Starting September 6th, 2016 (wwPDB News) |
ASH URL: https://sysimm.org/ash_service/ [About ASH] ASH (Alignment of Structural Homologs) is a structure alignment program that has been developed for PDBj. Earlier versions of ASH were written by Hiroyuki Toh[1]. The core alignment algorithm based on the ... |
The RDF version of SIFTS is now available at our FTP site ftp://ftp.pdbj.org/RDF/sifts/ . The RDF version of SIFTS is now available at our FTP site ftp://ftp.pdbj.org/RDF/sifts/. SIFTS provides various annotations of protein sequences in the PDB such as the Gene Ontology, taxonomy (biological species), structural classifications (SCOP and CATH ... |
Deposit ORCID and Grant Information with PDB Data ( wwPDB News ) Deposit ORCID and Grant Information with PDB Data (wwPDB News) |
Access to wwPDB and RCSB PDB websites ( wwPDB News ) Access to wwPDB and RCSB PDB websites (wwPDB News) |
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AutoDep Deposition System to Be Retired, Effective August 25 th 2016. ADIT-NMR and EMDep Deposition Systems to Be Retired, Effective September 30 th 2016. ( wwPDB News ) AutoDep Deposition System to Be Retired, Effective August 25th 2016. ADIT-NMR and EMDep Deposition Systems to Be Retired, Effective September 30th 2016. (wwPDB News) |
Improved Worldwide Support for wwPDB Deposition, Validation, and Annotation ( wwPDB News ) Improved Worldwide Support for wwPDB Deposition, Validation, and Annotation (wwPDB News) |
Molmil molecular viewer - [Introduction] - [How to Use] - [Support] - [Trouble Shooting] Molmil as a standalone web-based viewer (for user-supplied files) is available from https://pdbj.org/molmil2/. Alternatively, Molmil is also available as a local installable version (with ... |
Designate Depositions for the CASP-12 Structure Prediction Competition ( wwPDB News ) Designate Depositions for the CASP-12 Structure Prediction Competition (wwPDB News) |
News on 2016-5-10 jV 4.5.1." /> PDBj announces the bug fix update of the molecular viewer jV 4.5.1. The difference from the previous version (4.5) is that the bug fix involved in writing static image into directories without permission. |
New NMR and 3DEM Validation Reports for Archived PDB Structures ( wwPDB News ) New NMR and 3DEM Validation Reports for Archived PDB Structures (wwPDB News) |
Ligand Validation Workshop Paper Published ( wwPDB News ) Ligand Validation Workshop Paper Published (wwPDB News) |
Basic Usage In this page, we refer to basic usage of PDBj. [Search entries by PDB ID] If you know the PDB ID which you want to get information, you can use the PDBj Mine. The procedure is described below. 1. At the top of the page you can find a search field. 2. ... |
Data Deposition PDB Deposition wwPDB deposition & annotation (D&A) system is a new deposition tool developed by the wwPDB partners. It supports X-ray, EM and NMR structures. wwPDB Deposition tool : http://deposit-pdbj.wwpdb.org/deposition/ (PDBj) ADIT-NMR ... |
The PDBj Mine2 relational database (RDB) now integrates the summary data of SIFTS developed by PDBe and UniProt. The PDBj Mine2 relational database (RDB) now integrates the summary data of SIFTS developed by PDBe and UniProt. By combining PDBj Mine2 and SIFTS, the user can easily retrieve, using SQL, various annotations of protein sequences in the PDB such as the ... |
SIFTS What is SIFTS? SIFTS*1 (Structure integration with function, taxonomy and sequence) is an up-to-date resource for residue-level mapping between UniProt and PDB entries. The resource also provides residue-level annotation from the IntEnz, GO, Pfam, ... |
Derived databases eF-site eF-site (electrostatic-surface of Functional site) is a database for molecular surfaces of proteins' functional sites, displaying the electrostatic potentials and hydrophobic properties together on the Connolly surfaces of the active sites, ... |
Zika Virus Structure Released ( wwPDB News ) Zika Virus Structure Released (wwPDB News) |
wwPDB Deposition, Annotation, and Validation System To Support Suppression of Entry Author Lists and Titles ( wwPDB News ) wwPDB Deposition, Annotation, and Validation System To Support Suppression of Entry Author Lists and Titles (wwPDB News) |
AutoDep, ADIT-NMR, EMDep Deposition Systems to Be Retired, Effective September 30 th 2016 ( wwPDB News ) AutoDep, ADIT-NMR, EMDep Deposition Systems to Be Retired, Effective September 30th 2016 (wwPDB News) |
wwPDB Deposition System: Getting Started Please refer to Deposition Tutorial at wwPDB site. |
Updated X-ray Validation Reports for Archived PDB Structures Now Available ( wwPDB News ) Updated X-ray Validation Reports for Archived PDB Structures Now Available (wwPDB News) |
a tutorial about PDBj Mine search services -FAQ Q) Do you have a tutorial on the PDBj Mine search service? A) Using PDBj Mine, you can do Quick search, Advanced search and SQL search depending on your intended use. Please see the following pages for each usage: - Quick serach : The basics - ... |