RCSB-PDB mirror site in Osaka University, Japan is closed on Dec 28, 2005 (Japanese time). Please access PDBj site from now on.

From January 15, 2011(JST), the wwPDB will resume the practice of providing advance notification of PDB entries that are about to be released in the following week.( wwPDB News... )

... now available. The PDBx/mmCIF data standard underpins the Protein Data Bank (PDB) Core Archive, which is jointly managed by the worldwide Protein Data Bank ...

The articles of "Molecule of the Month: MOM", which are produced by Dr. David S. Goodsell and appear at the RCSB-PDB Web pages, are translated into Japanese by the PDBj staff and are open here.

Links to 3D-insight, GDB, KEGG are added to each result of the PDB browser (xPSSS).

... 6 pages A4 12 pages) 2021 Calendar for celebrating 50th anniversary of PDB - - English A4 size, starts from Sunday (36MB) A4 size, starts from Monday ...

Announcement: PDB Archive Version 4.0 to be Released Summer 2011 ( wwPDB News... )

... sequence) promode.pdbj.org Promode Elastic (Database of normal mode analysis of PDB data)

Functional Details Page is added in each result of the PDB browser (xPSSS).

Functional Details Page has been revised for each result of the PDB browser(xPSSS), so that the correct chain names appear.

... to provide overall quality percentile on map-model fitness compared to other PDB entries in the wwPDB validation report as the next step. [ wwPDB News ...

... . Individual sponsorships are also available. Consider supporting the next 50 years of PDB's spirit of openness, cooperation, and education with a donation to the ...

Announcement: PDB Archive Version 4.0 to be Released July 13, 2011 ( wwPDB News... )

... , literary, charitable, and educational purposes. Consider supporting the next 50 years of PDB's spirit of openness, cooperation, and education with a donation to the ...

... can be seen with the PDBx/mmCIF files with PDBj's Mine PDB Explorer service. Besides PDBx/mmCIF other STAR formatted files should also work ...

... and molecular surface of proteins from the atomic coordinate of proteins in PDB format. The electrostiatic potentials are calculated by solving the Poisson-Bolzman equation ...

The FTP protocol for file downloads has been losing popularity over the years in favor of HTTP/S. There are many advantages of HTTP/S including speed, statelessness, security (HTTPS), and better support. Importantly during the past 2-3 years the main web ...

PDBx/mmCIF Conversion service provided by PDBj now supports Chemical Component files in mmCIF format. The Chem Comp file in mmCIF format is converted to PDB format file.

... for the similar ligand binding sites for the uploaded coordinate file with PDB format. The representative binding sites in eF-site database are searched by ...

The FTP protocol for file downloads has been losing popularity over the years in favor of HTTP/S. There are many advantages of HTTP/S including speed, statelessness, security (HTTPS), and better support. Importantly during the past 2-3 years the main web ...

... can easily retrieve, using SQL, various annotations of protein sequences in the PDB such as the Gene Ontology, taxonomy (biological species), structural classification (SCOP and ...

... have been updated accordingly. This improves the Findability and Interoperability of the PDB data and opens up new opportunities to use the updated peptide residue ...

... .org/RDF/sifts/. SIFTS provides various annotations of protein sequences in the PDB such as the Gene Ontology, taxonomy (biological species), structural classifications (SCOP and ...

... S, Zardecki C, Voigt M, Berman HM, Burley SK (2015) The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology. PLoS Biol ...

A new publication in Acta Cryst D announces the mandatory submission of PDBx/mmCIF to the PDB for crystallographic depositions. (wwPDB news)