PDB: 30506 resultsInfo pagesStatus searchChemie searchBIRD

---

1G2J	RNA OCTAMER R(CCCP*GGGG) CONTAINING PHENYL RIBONUCLEOTIDE Descriptor: 5'-R(*CP*CP*CP*(PYY)P*GP*GP*GP*G)-3', CALCIUM ION Authors: Minasov, G, Matulic-Adamic, J, Wilds, C.J, Haeberli, P, Usman, N, Beigelman, L, Egli, M. Deposit date: 2000-10-20 Release date: 2000-12-06 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Crystal structure of an RNA duplex containing phenyl-ribonucleotides, hydrophobic isosteres of the natural pyrimidines. RNA, 6, 2000
3MQK	Cbf5-Nop10-Gar1 complex binding with 17mer RNA containing ACA trinucleotide Descriptor: RNA (5'-R(P*CP*GP*AP*UP*CP*CP*AP*CP*A)-3'), RNA (5'-R(P*GP*UP*UP*CP*GP*AP*UP*CP*CP*AP*CP*AP*G)-3'), Ribosome biogenesis protein Nop10, ... Authors: Zhou, J, Liang, B, Li, H. Deposit date: 2010-04-28 Release date: 2010-12-29 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide. Rna, 17, 2011
2JYJ	Re-refining the tetraloop-receptor RNA-RNA complex using NMR-derived restraints and Xplor-nih (2.18) Descriptor: RNA (43-MER) Authors: Zuo, X, Wang, J, Foster, T.R, Schwieters, C.D, Tiede, D.M, Butcher, S.E, Wang, Y. Deposit date: 2007-12-13 Release date: 2008-10-07 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex. J.Mol.Biol., 351, 2005
1CQL	NMR STRUCTURE OF SRP RNA DOMAIN IV Descriptor: SRP DOMAIN IV RNA Authors: Schmitz, U, James, T.L. Deposit date: 1999-08-06 Release date: 2000-01-14 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Structure of the phylogenetically most conserved domain of SRP RNA. RNA, 5, 1999
1CQ5	NMR STRUCTURE OF SRP RNA DOMAIN IV Descriptor: SRP RNA DOMAIN IV Authors: Schmitz, U, James, T.L, Behrens, S, Freymann, D.M, Lukavsky, P, Walter, P. Deposit date: 1999-08-05 Release date: 1999-08-23 Last modified: 2022-02-16 Method: SOLUTION NMR Cite: Structure of the phylogenetically most conserved domain of SRP RNA. RNA, 5, 1999
6PPQ	Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' adenosine Descriptor: Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, RNA (5'-R(*UP*UP*UP*UP*UP*A)-3'), ... Authors: Montemayor, E.J, Butcher, S.E. Deposit date: 2019-07-08 Release date: 2020-06-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes. Rna, 26, 2020
6PPV	Structure of S. pombe Lsm1-7 with RNA, polyuridine with 3' guanosine Descriptor: Probable U6 snRNA-associated Sm-like protein LSm3, Probable U6 snRNA-associated Sm-like protein LSm4, RNA (5'-R(*AP*UP*UP*UP*UP*G)-3'), ... Authors: Montemayor, E.J, Butcher, S.E. Deposit date: 2019-07-08 Release date: 2020-06-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes. Rna, 26, 2020
6FQ1	Crystal structure of the RRM12 domain of IMP3 Descriptor: 1,2-ETHANEDIOL, Insulin-like growth factor 2 mRNA-binding protein 3 Authors: Jia, M, Gut, H, Chao, A.J. Deposit date: 2018-02-12 Release date: 2018-09-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.31 Å) Cite: Structural basis of IMP3 RRM12 recognition of RNA. RNA, 24, 2018
4XW0	Crystal structure of (GCCU(G-LNA)CCUGC)2 duplex Descriptor: RNA (5'-R(*GP*CP*CP*UP*(LCG)P*CP*CP*UP*GP*C)-3'), SULFATE ION Authors: Kiliszek, A, Banaszak, K, Rypniewski, W. Deposit date: 2015-01-28 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation. Rna, 22, 2016
4XW1	Crystal structure of (GCCU(G-LNA)CCUG)2 duplex Descriptor: RNA (5'-R(*GP*CP*CP*UP*(LCG)P*CP*CP*UP*G)-3') Authors: Kiliszek, A, Banaszak, K, Rypniewski, W. Deposit date: 2015-01-28 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.302 Å) Cite: Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation. Rna, 22, 2016
6J7Z	Human mitochondrial Oligoribonuclease in complex with RNA Descriptor: CITRIC ACID, MAGNESIUM ION, Oligoribonuclease, ... Authors: Chu, L.Y, Agrawal, S, Yuan, H.S. Deposit date: 2019-01-18 Release date: 2019-08-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.005 Å) Cite: Structural insights into nanoRNA degradation by human Rexo2. Rna, 25, 2019
6U9X	Structure of T. brucei MERS1-RNA complex Descriptor: Mitochondrial edited mRNA stability factor 1, RNA (5'-R(*GP*AP*GP*AP*GP*GP*GP*GP*GP*UP*U)-3') Authors: Schumacher, M.A. Deposit date: 2019-09-09 Release date: 2019-11-06 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structures of MERS1, the 5' processing enzyme of mitochondrial mRNAs inTrypanosoma brucei. Rna, 26, 2020
5HFZ	Mmi1 YTH domain Descriptor: YTH domain-containing protein mmi1 Authors: Chatterjee, D, Goldgur, Y, Shuman, S. Deposit date: 2016-01-07 Release date: 2016-02-10 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast. Rna, 22, 2016
5H8A	Mmi1 YTH domain Descriptor: YTH domain-containing protein mmi1 Authors: Chatterjee, D, Goldgur, Y, Shuman, S. Deposit date: 2015-12-23 Release date: 2016-01-13 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.751 Å) Cite: Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast. Rna, 22, 2016
3MOJ	Structure of the RNA binding domain of the Bacillus subtilis YxiN protein complexed with a fragment of 23S ribosomal RNA Descriptor: ATP-dependent RNA helicase dbpA, RNA (69-MER) Authors: Hardin, J.W, Hu, Y, McKay, D.B. Deposit date: 2010-04-22 Release date: 2010-08-04 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.902 Å) Cite: Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif. J.Mol.Biol., 402, 2010
1JZC	THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA Descriptor: 5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3' Authors: Kim, C.-H, Kao, C.C. Deposit date: 2001-09-14 Release date: 2003-10-07 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine RNA, 7, 2001
3QG9	crystal structure of FBF-2/gld-1 FBEa A7U mutant complex Descriptor: 1,2-ETHANEDIOL, 5'-R(*UP*GP*UP*GP*CP*CP*UP*UP*A)-3', Fem-3 mRNA-binding factor 2 Authors: Koh, Y.Y, Wang, Y, Qiu, C, Opperman, L, Gross, L, Hall, T.M.T, Wickens, M. Deposit date: 2011-01-24 Release date: 2011-03-23 Last modified: 2018-01-24 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Stacking interactions in PUF-RNA complexes. Rna, 17, 2011
5IEM	NMR structure of the 5'-terminal hairpin of the 7SK snRNA Descriptor: 7SK snRNA Authors: Bourbigot, S, Dock-Bregeon, A.C, Coutant, J, Kieffer, B, Lebars, I. Deposit date: 2016-02-25 Release date: 2016-11-02 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Solution structure of the 5'-terminal hairpin of the 7SK small nuclear RNA. RNA, 22, 2016
3QGC	Crystal structure of FBF-2 R288Y mutant in complex with gld-1 FBEa A7U mutant Descriptor: 5'-R(*UP*GP*UP*GP*CP*CP*UP*UP*A)-3', Fem-3 mRNA-binding factor 2 Authors: Wang, Y, Qiu, C, Koh, Y.Y, Opperman, L, Gross, L, Hall, T.M.T, Wickens, M. Deposit date: 2011-01-24 Release date: 2011-03-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Stacking interactions in PUF-RNA complexes. Rna, 17, 2011
3QGB	Crystal structure of FBF-2 R288Y mutant in complex with gld-1 FBEa Descriptor: 5'-R(*UP*GP*UP*GP*CP*CP*AP*UP*A)-3', Fem-3 mRNA-binding factor 2 Authors: Wang, Y, Qiu, C, Koh, Y.Y, Opperman, L, Gross, L, Hall, T.M.T, Wickens, M. Deposit date: 2011-01-24 Release date: 2011-03-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Stacking interactions in PUF-RNA complexes. Rna, 17, 2011
6NJY	Type IV CRISPR associated RNA endonuclease Cas6 - apo form Descriptor: SULFATE ION, Type IV CRISPR associated Cas6 RNA endonuclease, beta-D-glucopyranose Authors: Jackson, R.N, Warner, E, Olsen, K.J. Deposit date: 2019-01-04 Release date: 2019-07-10 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Structural basis of Type IV CRISPR RNA biogenesis by a Cas6 endoribonuclease. Rna Biol., 16, 2019
2PY9	Protein-RNA Interaction involving KH1 domain from Human Poly(C)-Binding Protein-2 Descriptor: 12-mer C-rich strand of human telomeric RNA, Poly(rC)-binding protein 2 Authors: James, T.L, Du, Z, Lee, J.K. Deposit date: 2007-05-15 Release date: 2007-06-12 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.56 Å) Cite: X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2. Rna, 13, 2007
1NZ1	Solution structure of the S. cerevisiae U6 Intramolecular stem-loop containing an SP phosphorothioate at nucleotide U80 Descriptor: SP U6 Intramolecular Stem-Loop RNA Authors: Reiter, N.J, Nikstad, L.J, Allman, A.M, Johnson, R.J, Butcher, S.E. Deposit date: 2003-02-14 Release date: 2003-05-13 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification. RNA, 9, 2003
1IK5	Crystal Structure of a 14mer RNA Containing Double UU Bulges in Two Crystal Forms: A Novel U*(AU) Intramolecular Base Triple Descriptor: 5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3', 5'-R(*GP*GP*UP*AP*UP*UP*UP*UP*GP*GP*UP*AP*(CBR)P*C)-3', MAGNESIUM ION Authors: Deng, J, Xiong, Y, Sudarsanakumar, C, Shi, K, Sundaralingam, M. Deposit date: 2001-05-02 Release date: 2001-11-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple. RNA, 7, 2001
6UP0	Structure of the Mango-III fluorescent aptamer bound to YO3-Biotin Descriptor: MAGNESIUM ION, Mango-III fluorescent aptamer, POTASSIUM ION, ... Authors: Trachman, R.J, Ferre-D'Amare, A.R. Deposit date: 2019-10-16 Release date: 2020-10-21 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET. Rna, 27, 2021

<12345678910111213141516>