PDB: 30506 resultsInfo pagesStatus searchChemie searchBIRD

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6I1W	Structure of the RNA duplex containing pseudouridine residue (5'-Gp(PSU)pC-3' sequence context) Descriptor: RNA (5'-R(*AP*CP*UP*GP*AP*CP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*GP*(PSU)P*CP*AP*GP*U)-3') Authors: Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z. Deposit date: 2018-10-30 Release date: 2019-11-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair. Sci Rep, 9, 2019
6I1V	Structure of the RNA duplex containing pseudouridine residue (5'-Cp(PSU)pG-3' sequence context) Descriptor: RNA (5'-R(*AP*CP*UP*CP*AP*GP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*CP*(PSU)P*GP*AP*GP*U)-3') Authors: Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z. Deposit date: 2018-10-30 Release date: 2019-11-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair. Sci Rep, 9, 2019
6U6J	RNA-monomer complex containing pyrophosphate linkage Descriptor: 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(DPG))-3') Authors: Zhang, W, Szostak, J.W, Giurgiu, C, Wright, T. Deposit date: 2019-08-29 Release date: 2019-11-20 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Prebiotically Plausible "Patching" of RNA Backbone Cleavage through a 3'-5' Pyrophosphate Linkage. J.Am.Chem.Soc., 141, 2019
7PY1	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusG (the consensus NusG-EC) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-08 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY5	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (the consensus NusA-NusG-EC) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-09 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY3	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (the consensus NusA-EC) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-08 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY8	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusG (NusG-EC in less-swiveled conformation) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-09 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY0	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusG (NusG-EC in more-swiveled conformation) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-08 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY7	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (NusA and NusG elongation complex in more-swiveled conformation) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-09 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PYK	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (NusA elongation complex in more-swiveled conformation) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-10 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PY6	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA and NusG (NusA and NusG elongation complex in less-swiveled conformation) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-09 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
7PYJ	CryoEM structure of E.coli RNA polymerase elongation complex bound to NusA (NusA elongation complex in less-swiveled conformation) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-10 Release date: 2022-03-23 Last modified: 2022-10-05 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
5CNR	Crystal structure-guided design of self-assembling RNA nano triangles Descriptor: CHLORIDE ION, RNA (5'-R(*AP*GP*AP*GP*GP*AP*CP*GP*GP*CP*G)-3'), RNA (5'-R(*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*CP*C)-3') Authors: Boerneke, M, Dibrov, S, Hermann, T. Deposit date: 2015-07-18 Release date: 2016-03-09 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles. Angew.Chem.Int.Ed.Engl., 55, 2016
6L1W	Zinc-finger Antiviral Protein (ZAP) bound to RNA Descriptor: RNA (5'-R(*CP*GP*UP*CP*GP*U)-3'), ZINC ION, Zinc finger CCCH-type antiviral protein 1 Authors: Luo, X, Wang, X, Gao, Y, Zhu, J, Liu, S, Gao, G, Gao, P. Deposit date: 2019-09-30 Release date: 2020-01-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.194 Å) Cite: Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein. Cell Rep, 30, 2020
5XWP	Crystal structure of LbuCas13a-crRNA-target RNA ternary complex Descriptor: RNA (30-MER), RNA (59-MER), Uncharacterized protein Authors: Liu, L, Li, X, Li, Z, Wang, Y. Deposit date: 2017-06-30 Release date: 2017-09-13 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.086 Å) Cite: The Molecular Architecture for RNA-Guided RNA Cleavage by Cas13a. Cell, 170, 2017
6QWS	Crystal structure of the Ski2 RNA-helicase Brr2 from Chaetomium thermophilum in the apo state Descriptor: Pre-mRNA splicing helicase-like protein, SULFATE ION Authors: Absmeier, E, Santos, K.F, Wahl, M.C. Deposit date: 2019-03-06 Release date: 2020-01-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Molecular Mechanism Underlying Inhibition of Intrinsic ATPase Activity in a Ski2-like RNA Helicase. Structure, 28, 2020
6QV3	Crystal structure of the Ski2 RNA-helicase Brr2 from Chaetomium thermophilum bound to ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ... Authors: Absmeier, E, Santos, K.F, Wahl, M.C. Deposit date: 2019-03-01 Release date: 2020-01-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular Mechanism Underlying Inhibition of Intrinsic ATPase Activity in a Ski2-like RNA Helicase. Structure, 28, 2020
6QV4	Crystal structure of the Ski2 RNA-helicase Brr2 from Chaetomium thermophilum bound to ATP-gamma-S Descriptor: ACETATE ION, MANGANESE (II) ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Absmeier, E, Santos, K.F, Wahl, M.C. Deposit date: 2019-03-01 Release date: 2020-01-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Molecular Mechanism Underlying Inhibition of Intrinsic ATPase Activity in a Ski2-like RNA Helicase. Structure, 28, 2020
1I4C	THE SOLUTION STRUCTURE OF THE MINOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA Descriptor: RNA (5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3') Authors: Tinoco Jr, I, Kim, C.-H. Deposit date: 2001-02-20 Release date: 2001-04-21 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter. J.Mol.Biol., 307, 2001
8B9I	Cryo-EM structure of MLE in complex with ADP:AlF4 and UUC RNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, MAGNESIUM ION, ... Authors: Jagtap, P.K.A, Hennig, J. Deposit date: 2022-10-06 Release date: 2023-10-18 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Mol.Cell, 83, 2023
6VAR	61 nt human Hepatitis B virus epsilon pre-genomic RNA Descriptor: RNA (61-MER) Authors: LeBlanc, R.M, Kasprzak, W.K, Longhini, A.P, Abulwerdi, F, Ginocchio, S, Shields, B, Nyman, J, Svirydava, M, Del Vecchio, C, Ivanic, J, Schneekloth, J.S, Dayie, T.K, Shapiro, B.A, Le Grice, S.F.J. Deposit date: 2019-12-17 Release date: 2020-12-30 Last modified: 2024-05-15 Method: SOLUTION NMR, SOLUTION SCATTERING Cite: Structural insights of the conserved "priming loop" of hepatitis B virus pre-genomic RNA. J.Biomol.Struct.Dyn., 2021
4K4X	Coxsackievirus B3 polymerase elongation complex (r2_form), rna Descriptor: GLYCEROL, MAGNESIUM ION, RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3'), ... Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
5DNO	Crystal structure of Mmi1 YTH domain complex with RNA Descriptor: RNA (5'-R(*CP*UP*UP*AP*AP*AP*C)-3'), YTH domain-containing protein mmi1 Authors: Wang, C.Y, Zhu, Y.W, Wu, J.H, Shi, Y.Y. Deposit date: 2015-09-10 Release date: 2016-04-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: A novel RNA-binding mode of the YTH domain reveals the mechanism for recognition of determinant of selective removal by Mmi1 Nucleic Acids Res., 44, 2016
6HMI	Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 Descriptor: RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') Authors: Campagne, S, Allain, F.H. Deposit date: 2018-09-12 Release date: 2019-08-14 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structural basis of a small molecule targeting RNA for a specific splicing correction. Nat.Chem.Biol., 15, 2019
5UEE	RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') Authors: Zhang, W, Tam, C.P, Szostak, J.W. Deposit date: 2017-01-01 Release date: 2017-07-05 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Insight into the mechanism of nonenzymatic RNA primer extension from the structure of an RNA-GpppG complex. Proc. Natl. Acad. Sci. U.S.A., 114, 2017

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