Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4NJO
DownloadVisualize
BU of 4njo by Molmil
crystal structure of cofactor(NAD+) bound 3-phosphoglycerate dehydrogenase in Entamoeba histolytica
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, D-3-phosphoglycerate dehydrogenase, putative, ...
Authors:Singh, R.K, Gourinath, S.
Deposit date:2013-11-11
Release date:2014-10-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Crystal structures and kinetics of Type III 3-phosphoglycerate dehydrogenase reveal catalysis by lysine.
Febs J., 281, 2014
5DNA
DownloadVisualize
BU of 5dna by Molmil
Crystal structure of Candida boidinii formate dehydrogenase
Descriptor: FORMATE DEHYDROGENASE, SULFATE ION
Authors:Guo, Q, Gakhar, L, Wichersham, K, Francis, K, Vardi-Kilshtain, A, Major, D.T, Cheatum, C.M, Kohen, A.
Deposit date:2015-09-09
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural and Kinetic Studies of Formate Dehydrogenase from Candida boidinii.
Biochemistry, 55, 2016
4NU5
DownloadVisualize
BU of 4nu5 by Molmil
Crystal Structure of PTDH R301A
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Phosphonate dehydrogenase
Authors:Nair, S.K, Chekan, J.R.
Deposit date:2013-12-03
Release date:2014-03-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Chemical rescue and inhibition studies to determine the role of arg301 in phosphite dehydrogenase.
Plos One, 9, 2014
5DT9
DownloadVisualize
BU of 5dt9 by Molmil
Crystal structure of a putative D-Erythronate-4-Phosphate Dehydrogenase from Vibrio cholerae
Descriptor: CHLORIDE ION, Erythronate-4-phosphate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Stogios, P.J, Skarina, T, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-09-17
Release date:2015-09-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.663 Å)
Cite:Crystal structure of a putative D-Erythronate-4-Phosphate Dehydrogenase from Vibrio cholerae
To Be Published
5DN9
DownloadVisualize
BU of 5dn9 by Molmil
Crystal structure of Candida boidinii formate dehydrogenase complexed with NAD+ and azide
Descriptor: AZIDE ION, CHLORIDE ION, FDH, ...
Authors:Guo, Q, Gakhar, L, Wichersham, K, Francis, K, Vardi-Kilshtain, A, Major, D.T, Cheatum, C.M, Kohen, A.
Deposit date:2015-09-09
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Kinetic Studies of Formate Dehydrogenase from Candida boidinii.
Biochemistry, 55, 2016
4NU6
DownloadVisualize
BU of 4nu6 by Molmil
Crystal Structure of PTDH R301K
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Phosphonate dehydrogenase, SULFATE ION
Authors:Nair, S.K, Chekan, J.R.
Deposit date:2013-12-03
Release date:2014-03-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Chemical rescue and inhibition studies to determine the role of arg301 in phosphite dehydrogenase.
Plos One, 9, 2014
1WWK
DownloadVisualize
BU of 1wwk by Molmil
Crystal structure of phosphoglycerate dehydrogenase from Pyrococcus horikoshii OT3
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, phosphoglycerate dehydrogenase
Authors:Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-06
Release date:2006-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of phosphoglycerate dehydrogenase from Pyrococcus horikoshii OT3
To be Published
1MX3
DownloadVisualize
BU of 1mx3 by Molmil
Crystal structure of CtBP dehydrogenase core holo form
Descriptor: ACETIC ACID, C-terminal binding protein 1, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Kumar, V, Carlson, J.E, Ohgi, K.E, Edwards, T.E, Rose, D.W, Escalante, C.R, Aggarwal, A.K.
Deposit date:2002-10-01
Release date:2002-12-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Transcription Corepressor CtBP Is an NAD+-Regulated Dehydrogenase
Mol.Cell, 10, 2002
1YBA
DownloadVisualize
BU of 1yba by Molmil
The active form of phosphoglycerate dehydrogenase
Descriptor: 2-OXOGLUTARIC ACID, D-3-phosphoglycerate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Thompson, J.R, Banaszak, L.J.
Deposit date:2004-12-20
Release date:2005-04-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Vmax Regulation through Domain and Subunit Changes. The Active Form of Phosphoglycerate Dehydrogenase
Biochemistry, 44, 2005
2W2K
DownloadVisualize
BU of 2w2k by Molmil
Crystal structure of the apo forms of Rhodotorula graminis D- mandelate dehydrogenase at 1.8A.
Descriptor: D-MANDELATE DEHYDROGENASE
Authors:Vachieri, S.G, Cole, A.R, Bagneris, C, Baker, D.P, Fewson, C.A, Basak, A.K.
Deposit date:2008-11-02
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of the Apo and Holo Forms of Rhodotorula Graminis D(-)-Mandelate Dehydrogenase
To be Published
1YGY
DownloadVisualize
BU of 1ygy by Molmil
Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis
Descriptor: D-3-phosphoglycerate dehydrogenase, L(+)-TARTARIC ACID
Authors:Dey, S, Grant, G.A, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2005-01-05
Release date:2005-01-25
Last modified:2019-07-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Mycobacterium tuberculosis D-3-Phosphoglycerate Dehydrogenase: EXTREME ASYMMETRY IN A TETRAMER OF IDENTICAL SUBUNITS
J.Biol.Chem., 280, 2005
2W2L
DownloadVisualize
BU of 2w2l by Molmil
Crystal structure of the holo forms of Rhodotorula graminis D- mandelate dehydrogenase at 2.5A.
Descriptor: D-MANDELATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Vachieri, S.G, Cole, A.R, Bagneris, C, Baker, D.P, Fewson, C.A, Basak, A.K.
Deposit date:2008-11-02
Release date:2009-11-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Apo and Holo Forms of Rhodotorula Graminis D(-)-Mandelate Dehydrogenase
To be Published
7EWH
DownloadVisualize
BU of 7ewh by Molmil
Crystal structure of human PHGDH in complex with Homoharringtonine
Descriptor: (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, D-3-phosphoglycerate dehydrogenase
Authors:Hsieh, C.H, Cheng, Y.S, Lee, Y.S, Huang, H.C, Juan, H.F.
Deposit date:2021-05-25
Release date:2022-12-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Homoharringtonine as a PHGDH inhibitor: Unraveling metabolic dependencies and developing a potent therapeutic strategy for high-risk neuroblastoma.
Biomed Pharmacother, 166, 2023
2WWR
DownloadVisualize
BU of 2wwr by Molmil
Crystal Structure of Human Glyoxylate Reductase Hydroxypyruvate Reductase
Descriptor: GLYOXYLATE REDUCTASE/HYDROXYPYRUVATE REDUCTASE, MAGNESIUM ION
Authors:Booth, M.P.S, Conners, R, Rumsby, G, Brady, R.L.
Deposit date:2009-10-26
Release date:2010-10-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structural Basis of Substrate Specificity in Human Glyoxylate Reductase/Hydroxypyruvate Reductase.
J.Mol.Biol., 360, 2006
1PSD
DownloadVisualize
BU of 1psd by Molmil
THE ALLOSTERIC LIGAND SITE IN THE VMAX-TYPE COOPERATIVE ENZYME PHOSPHOGLYCERATE DEHYDROGENASE
Descriptor: D-3-PHOSPHOGLYCERATE DEHYDROGENASE (PHOSPHOGLYCERATE DEHYDROGENASE), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SERINE
Authors:Schuller, D.J, Grant, G.A, Banaszak, L.J.
Deposit date:1995-05-02
Release date:1995-07-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The allosteric ligand site in the Vmax-type cooperative enzyme phosphoglycerate dehydrogenase.
Nat.Struct.Biol., 2, 1995
7CVP
DownloadVisualize
BU of 7cvp by Molmil
The Crystal Structure of human PHGDH from Biortus.
Descriptor: D-3-phosphoglycerate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Wang, F, Lv, Z, Cheng, W, Lin, D, Miao, Q, Huang, Y.
Deposit date:2020-08-26
Release date:2020-09-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Crystal Structure of human PHGDH from Biortus.
To Be Published
7DKM
DownloadVisualize
BU of 7dkm by Molmil
PHGDH covalently linked to oridonin
Descriptor: (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one, CHLORIDE ION, D-3-phosphoglycerate dehydrogenase, ...
Authors:Sun, Q, Lei, Y.
Deposit date:2020-11-25
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Biophysical and biochemical properties of PHGDH revealed by studies on PHGDH inhibitors.
Cell.Mol.Life Sci., 79, 2021
1QP8
DownloadVisualize
BU of 1qp8 by Molmil
CRYSTAL STRUCTURE OF A PUTATIVE FORMATE DEHYDROGENASE FROM PYROBACULUM AEROPHILUM
Descriptor: FORMATE DEHYDROGENASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Peat, T.S, Newman, J, Waldo, G.S, Terwilliger, T.C.
Deposit date:1999-06-01
Release date:1999-06-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Crystal Structure of a Putative Formate Dehydrogenase from Pyrobaculum Aerophilum
To be Published
2YQ4
DownloadVisualize
BU of 2yq4 by Molmil
Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus
Descriptor: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE
Authors:Holton, S.J, Anandhakrishnan, M, Geerlof, A, Wilmanns, M.
Deposit date:2012-11-05
Release date:2012-11-21
Last modified:2013-02-20
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Characterization of D-Isomer Specific 2-Hydroxyacid Dehydrogenase from Lactobacillus Delbrueckii Ssp. Bulgaricus
J.Struct.Biol., 181, 2013
1J49
DownloadVisualize
BU of 1j49 by Molmil
INSIGHTS INTO DOMAIN CLOSURE, SUBSTRATE SPECIFICITY AND CATALYSIS OF D-LACTATE DEHYDROGENASE FROM LACTOBACILLUS BULGARICUS
Descriptor: D-LACTATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Razeto, A, Kochhar, S, Hottinger, H, Dauter, M, Wilson, K.S, Lamzin, V.S.
Deposit date:2001-08-14
Release date:2002-05-29
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Domain closure, substrate specificity and catalysis of D-lactate dehydrogenase from Lactobacillus bulgaricus.
J.Mol.Biol., 318, 2002
1HL3
DownloadVisualize
BU of 1hl3 by Molmil
CtBP/BARS in ternary complex with NAD(H) and PIDLSKK peptide
Descriptor: C-TERMINAL BINDING PROTEIN 3, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PRO-ILE-ASP-LEU-SER-LYS-LYS PEPTIDE
Authors:Nardini, M, Spano, S, Cericola, C, Pesce, A, Massaro, A, Millo, E, Luini, A, Corda, D, Bolognesi, M.
Deposit date:2003-03-13
Release date:2003-06-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Ctbp/Bars: A Dual-Function Protein Involved in Transcription Co-Repression and Golgi Membrane Fission
Embo J., 22, 2003
2YQ5
DownloadVisualize
BU of 2yq5 by Molmil
Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus: NAD complexed form
Descriptor: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Holton, S.J, Anandhakrishnan, M, Geerlof, A, Wilmanns, M.
Deposit date:2012-11-05
Release date:2012-11-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Characterization of D-Isomer Specific 2-Hydroxyacid Dehydrogenase from Lactobacillus Delbrueckii Ssp. Bulgaricus
J.Struct.Biol., 181, 2013
1HKU
DownloadVisualize
BU of 1hku by Molmil
CtBP/BARS: a dual-function protein involved in transcription corepression and Golgi membrane fission
Descriptor: C-TERMINAL BINDING PROTEIN 3, FORMIC ACID, GLYCEROL, ...
Authors:Nardini, M, Spano, S, Cericola, C, Pesce, A, Massaro, A, Millo, E, Luini, A, Corda, D, Bolognesi, M.
Deposit date:2003-03-11
Release date:2003-06-19
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ctbp/Bars: A Dual-Function Protein Involved in Transcription Co-Repression and Golgi Membrane Fission
Embo J., 22, 2003
3NAQ
DownloadVisualize
BU of 3naq by Molmil
Apo-form of NAD-dependent formate dehydrogenase from higher-plant Arabidopsis thaliana
Descriptor: Formate dehydrogenase, SULFATE ION
Authors:Shabalin, I.G, Polyakov, K.M, Serov, A.E, Skirgello, O.E, Sadykhov, E.G, Dorovatovskiy, P.V, Tishkov, V.I, Popov, V.O.
Deposit date:2010-06-02
Release date:2010-07-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of the apo and holo forms of NAD-dependent formate dehydrogenase from the higher-plant Arabidopsis Thaliana
to be published
5Z20
DownloadVisualize
BU of 5z20 by Molmil
The ternary structure of D-lactate dehydrogenase from Pseudomonas aeruginosa with NADH and oxamate
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, D-lactate dehydrogenase (Fermentative), DI(HYDROXYETHYL)ETHER, ...
Authors:Furukawa, N, Miyanaga, A, Nakajima, M, Taguchi, H.
Deposit date:2017-12-28
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis of Sequential Allosteric Transitions in Tetrameric d-Lactate Dehydrogenases from Three Gram-Negative Bacteria.
Biochemistry, 57, 2018

219140

數據於2024-05-01公開中

PDB statisticsPDBj update infoContact PDBjnumon