PDB: 62 件ウェブページステータス検索Chemie searchBIRD

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8EVV	Apo form of DdlA from Pseudomonas aeruginosa PAO1 分子名称: D-alanine--D-alanine ligase A 著者 Pederick, J.L, Woolman, J.C, Bruning, J.B. 登録日 2022-10-21 公開日 2023-08-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
8EVX	DdlA from Pseudomonas aeruginosa PAO1 in complex with ADP and phosphorylated D-cycloserine 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase A, MAGNESIUM ION, ... 著者 Pederick, J.L, Woolman, J.C, Bruning, J.B. 登録日 2022-10-21 公開日 2023-08-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
8EVY	DdlB from Pseudomonas aeruginosa PAO1 in complex with ATP and D-ala-D-ala 分子名称: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase B, ... 著者 Pederick, J.L, Woolman, J.C, Bruning, J.B. 登録日 2022-10-21 公開日 2023-08-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
8EVZ	DdlB from Pseudomonas aeruginosa PAO1 in complex with ADP and phosphorylated D-cycloserine 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase B, MAGNESIUM ION, ... 著者 Pederick, J.L, Woolman, J.C, Bruning, J.B. 登録日 2022-10-21 公開日 2023-08-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
8EVW	DdlA from Pseudomonas aeruginosa PAO1 in complex with ATP and D-ala-D-ala 分子名称: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase A, ... 著者 Pederick, J.L, Woolman, J.C, Bruning, J.B. 登録日 2022-10-21 公開日 2023-08-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.22 Å) 主引用文献 Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
7U9K	Staphylococcus aureus D-alanine-D-alanine ligase in complex with ATP, D-ala-D-ala, Mg2+ and K+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanine ligase, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2022-03-10 公開日 2023-03-15 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure-guided design and synthesis of ATP-competitive N-acyl-substituted sulfamide d-alanine-d-alanine ligase inhibitors. Bioorg.Med.Chem., 96, 2023
7U56	Crystal Structure of D-alanine--D-alanine ligase from Klebsiella pneumoniae subsp. pneumoniae in complex with AMP 分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2022-03-01 公開日 2022-03-09 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal Structure of D-alanine--D-alanine ligase from Klebsiella pneumoniae subsp. pneumoniae in complex with AMP to be published
6LL9	Crystal structure of D-alanine-D-alanine ligase from Aeromonas hydrophila 分子名称: D-ALANINE, D-alanine--D-alanine ligase 著者 Zhang, H. 登録日 2019-12-22 公開日 2020-07-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Insights into the Inhibition ofAeromonas hydrophilad-Alanine-d-Alanine Ligase by Integration of Kinetics and Structural Analysis. J.Agric.Food Chem., 68, 2020
6U1G	Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Cs+ 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CESIUM ION, D-ALANINE, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1H	Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphate, Mg2+ and K+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase, MAGNESIUM ION, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1K	Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, carbonate, D-alanine-D-alanine, Mg2+ and K+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, CARBONATE ION, D-ALANINE, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1D	Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Rb+ 分子名称: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1C	Apo form of Thermus thermophilus D-alanine-D-alanine ligase 分子名称: D-alanine--D-alanine ligase 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1J	Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphate, D-ala-D-ala, Mg2+ and K+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase, ... 著者 Pederick, J.L, Bruning, J.B, Thompson, A.P. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1E	Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Rb+ 分子名称: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1F	Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Cs+ 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CESIUM ION, D-ALANINE, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1I	Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphorylated D-cycloserine, Mg2+ and K+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase, MAGNESIUM ION, ... 著者 Pederick, J.L, Bruning, J.B, Thompson, A.P. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6DGI	The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961 分子名称: ACETATE ION, D-alanine--D-alanine ligase, GLYCEROL, ... 著者 Tan, K, Zhou, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2018-05-17 公開日 2018-05-30 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961 To Be Published
5NRI	Crystal structure of Burkholderia pseudomallei D-alanine-D-alanine ligase in complex with AMP and D-Ala-D-Ala 分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, D-ALANINE, ... 著者 Diaz-Saez, L, Hunter, W.N. 登録日 2017-04-23 公開日 2018-05-30 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Burkholderia pseudomallei d-alanine-d-alanine ligase; detailed characterisation and assessment of a potential antibiotic drug target. Febs J., 2019
5NRH	Crystal structure of Burkholderia pseudomallei D-alanine-D-alanine ligase in complex with AMP 分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, D-alanine--D-alanine ligase, ... 著者 Diaz-Saez, L, Hunter, W.N. 登録日 2017-04-23 公開日 2018-05-30 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Burkholderia pseudomallei d-alanine-d-alanine ligase; detailed characterisation and assessment of a potential antibiotic drug target. Febs J., 2019
5D8D	Crystal structure of D-alanine-D-alanine ligase from Acinetobacter baumannii 分子名称: D-alanine--D-alanine ligase 著者 Huynh, K.H, Hong, M.K, Kang, L.W. 登録日 2015-08-17 公開日 2016-08-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding J. Microbiol., 53, 2015
5DMX	Crystal structure of D-alanine-D-alanine ligase from Acinetobacter baumannii, space group p212121 分子名称: D-alanine--D-alanine ligase 著者 Huynh, K.H, Hong, M.K, Kang, L.W. 登録日 2015-09-09 公開日 2016-08-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding J. Microbiol., 53, 2015
5BPF	Crystal structure of ADP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis 分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, D-alanine-D-alanine ligase, ... 著者 Tran, H.T, Kang, L.W, Hong, M.K. 登録日 2015-05-28 公開日 2016-03-02 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016
5BPH	Crystal structure of AMP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis 分子名称: ACETATE ION, ADENOSINE MONOPHOSPHATE, D-alanine--D-alanine ligase, ... 著者 Tran, H.T, Kang, L.W, Hong, M.K. 登録日 2015-05-28 公開日 2016-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016
5C1O	Crystal structure of AMP-PNP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis 分子名称: D-alanine--D-alanine ligase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Tran, H.T, Kang, L.W, Hong, M.K. 登録日 2015-06-15 公開日 2016-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016

 

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