PDB: 196 resultsInfo pagesStatus searchChemie searchBIRD

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3KXA	Crystal Structure of NGO0477 from Neisseria gonorrhoeae Descriptor: ASPARAGINE, CHLORIDE ION, Putative uncharacterized protein, ... Authors: Ren, J, Sainsbury, S, Nettleship, J.E, Owens, R.J, Oxford Protein Production Facility (OPPF) Deposit date: 2009-12-02 Release date: 2010-01-19 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The crystal structure of NGO0477 from Neisseria gonorrhoeae reveals a novel protein fold incorporating a helix-turn-helix motif. Proteins, 78, 2010
6LTY	DNA bound antitoxin HigA3 Descriptor: DNA (5'-D(P*CP*CP*AP*CP*GP*AP*GP*AP*TP*AP*TP*AP*AP*CP*CP*TP*AP*GP*AP*G)-3'), DNA (5'-D(P*CP*TP*CP*TP*AP*GP*GP*TP*TP*AP*TP*AP*TP*CP*TP*CP*GP*TP*GP*G)-3'), Putative antitoxin HigA3 Authors: Park, J.Y, Lee, B.J. Deposit date: 2020-01-23 Release date: 2020-07-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.28 Å) Cite: Induced DNA bending by unique dimerization of HigA antitoxin. Iucrj, 7, 2020
6LTZ	Induced DNA bending by unique dimerization of HigA antitoxin Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Park, J.Y, Lee, B.J. Deposit date: 2020-01-23 Release date: 2020-07-15 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.973 Å) Cite: Induced DNA bending by unique dimerization of HigA antitoxin. Iucrj, 7, 2020
3ZHM	N-terminal domain of the CI repressor from bacteriophage TP901-1 in complex with the OL2 operator half-site Descriptor: 5'-D(*AP*CP*GP*TP*GP*AP*AP*CP*TP*TP*GP*CP*AP*CP *TP*TP*GP*A)-3', 5'-D(*AP*GP*TP*TP*CP*AP*CP*GP*TP*TP*CP*AP*AP*GP *TP*GP*CP*A)-3', CI Authors: Frandsen, K.H, Rasmussen, K.K, Poulsen, J.N, Lo Leggio, L. Deposit date: 2012-12-22 Release date: 2013-12-25 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Binding of the N-Terminal Domain of the Lactococcal Bacteriophage Tp901-1 Ci Repressor to its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. Biochemistry, 52, 2013
3ZHI	N-terminal domain of the CI repressor from bacteriophage TP901-1 Descriptor: CI Authors: Frandsen, K.H, Rasmussen, K.K, Poulsen, J.N, Lo Leggio, L. Deposit date: 2012-12-21 Release date: 2013-12-25 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Binding of the N-Terminal Domain of the Lactococcal Bacteriophage Tp901-1 Ci Repressor to its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. Biochemistry, 52, 2013
1PER	THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES Descriptor: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 REPRESSOR) Authors: Rodgers, D.W, Harrison, S.C. Deposit date: 1993-11-09 Release date: 1994-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites. Structure, 1, 1993
3OP9	Crystal structure of transcriptional regulator from Listeria innocua Descriptor: CHLORIDE ION, Pli0006 protein Authors: Michalska, K, Li, H, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2010-08-31 Release date: 2010-09-15 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.898 Å) Cite: Crystal structure of transcriptional regulator from Listeria innocua To be Published
1PRA	DETERMINATION OF THE NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN (RESIDUES 1 TO 69) OF THE 434 REPRESSOR AND COMPARISON WITH THE X-RAY CRYSTAL STRUCTURE Descriptor: 434 REPRESSOR Authors: Neri, D, Billeter, M, Wuthrich, K. Deposit date: 1991-11-18 Release date: 1993-10-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Determination of the nuclear magnetic resonance solution structure of the DNA-binding domain (residues 1 to 69) of the 434 repressor and comparison with the X-ray crystal structure. J.Mol.Biol., 223, 1992
4OB4	Structure of the S. venezulae BldD DNA-binding domain Descriptor: Putative DNA-binding protein Authors: schumacher, M.A, Tschowri, N, Buttner, M, Brennan, R. Deposit date: 2014-01-06 Release date: 2014-11-19 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Tetrameric c-di-GMP mediates effective transcription factor dimerization to control Streptomyces development. Cell(Cambridge,Mass.), 158, 2014
2XCJ	Crystal structure of P2 C, the immunity repressor of temperate E. coli phage P2 Descriptor: C PROTEIN, FORMIC ACID, GLYCEROL, ... Authors: Massad, T, Skaar, K, Hogbom, M, Stenmark, P. Deposit date: 2010-04-23 Release date: 2010-07-28 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of the P2 C-Repressor: A Binder of Non-Palindromic Direct DNA Repeats. Nucleic Acids Res., 38, 2010
4IVZ	A Y37F mutant of C.Esp1396I bound to its highest affinity operator site OM Descriptor: DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3'), Regulatory protein Authors: Martin, R.N.A, McGeehan, J.E, Kneale, G.G. Deposit date: 2013-01-23 Release date: 2014-01-29 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I. Plos One, 9, 2014
5WOQ	Crystal structure of an XRE family protein transcriptional regulator from Mycobacterium smegmatis Descriptor: Transcriptional regulator ClgR Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-08-02 Release date: 2017-08-16 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structure of an XRE family protein transcriptional regulator from Mycobacterium smegmatis To Be Published
4IWR	C.Esp1396I bound to a 25 base pair operator site Descriptor: DNA (25-MER), Regulatory protein Authors: Martin, R.N.A, McGeehan, J.E, Ball, N.J, Streeter, S.D, Thresh, S.-J, Kneale, G.G. Deposit date: 2013-01-24 Release date: 2013-09-11 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural analysis of DNA-protein complexes regulating the restriction-modification system Esp1396I. Acta Crystallogr.,Sect.F, 69, 2013
4PU8	Shewanella oneidensis Toxin Antitoxin System Antitoxin Protein HipB Resolution 2.35 Descriptor: Toxin-antitoxin system antidote transcriptional repressor Xre family Authors: Wen, Y, Behiels, E, Felix, J, Elegheert, J, Vergauwen, B, Devreese, B, Savvides, S. Deposit date: 2014-03-12 Release date: 2014-08-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.35 Å) Cite: The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence. Nucleic Acids Res., 42, 2014
1RPE	THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3'), PROTEIN (434 REPRESSOR) Authors: Shimon, L.J.W, Harrison, S.C. Deposit date: 1993-03-24 Release date: 1994-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The phage 434 OR2/R1-69 complex at 2.5 A resolution. J.Mol.Biol., 232, 1993
1R63	STRUCTURAL ROLE OF A BURIED SALT BRIDGE IN THE 434 REPRESSOR DNA-BINDING DOMAIN, NMR, 20 STRUCTURES Descriptor: REPRESSOR PROTEIN FROM BACTERIOPHAGE 434 Authors: Pervushin, K.V, Billeter, M, Siegal, G, Wuthrich, K. Deposit date: 1996-11-08 Release date: 1997-06-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural role of a buried salt bridge in the 434 repressor DNA-binding domain. J.Mol.Biol., 264, 1996
1R69	STRUCTURE OF THE AMINO-TERMINAL DOMAIN OF PHAGE 434 REPRESSOR AT 2.0 ANGSTROMS RESOLUTION Descriptor: REPRESSOR PROTEIN CI Authors: Mondragon, A, Subbiah, S, Alamo, S.C, Drottar, M, Harrison, S.C. Deposit date: 1988-12-08 Release date: 1989-10-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of the amino-terminal domain of phage 434 repressor at 2.0 A resolution. J.Mol.Biol., 205, 1989
4PU7	Shewanella oneidensis Toxin Antitoxin System Antitoxin Protein HipB Resolution 1.85 Descriptor: Toxin-antitoxin system antidote transcriptional repressor Xre family Authors: Wen, Y, Behiels, E, Felix, J, Elegheert, J, Vergauwen, B, Devreese, B, Savvides, S. Deposit date: 2014-03-12 Release date: 2014-08-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.85 Å) Cite: The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence. Nucleic Acids Res., 42, 2014
1SQ8	a variant 434 repressor DNA binding domain devoid of hydroxyl groups, NMR, 20 STRUCTURES Descriptor: dh434 Authors: Iwai, H, Wider, G, Wuthrich, K. Deposit date: 2004-03-18 Release date: 2004-07-20 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: NMR Structure of a Variant 434 Repressor DNA-binding Domain Devoid of Hydroxyl Groups J.Biomol.Nmr, 29, 2004
3BS3	Crystal structure of a putative DNA-binding protein from Bacteroides fragilis Descriptor: 1,2-ETHANEDIOL, Putative DNA-binding protein, SULFATE ION Authors: Cuff, M.E, Bigelow, L, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2007-12-21 Release date: 2008-01-15 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (1.65 Å) Cite: The structure of a putative DNA-binding protein from Bacteroides fragilis. TO BE PUBLISHED
6B9T	Crystal structure of MPnS with substrate 2-hydroxyethylphosphonate (2-HEP) and Fe(II) bound Descriptor: (2-hydroxyethyl)phosphonic acid, FE (III) ION, FORMIC ACID, ... Authors: Born, D.A, Drennan, C.L. Deposit date: 2017-10-11 Release date: 2017-12-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural basis for methylphosphonate biosynthesis. Science, 358, 2017
6B9S	MPnS crystallized in the absence of substrate Descriptor: FE (III) ION, Methylphosphonate synthase Authors: Born, D.A, Drennan, C.L. Deposit date: 2017-10-11 Release date: 2017-12-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.373 Å) Cite: Structural basis for methylphosphonate biosynthesis. Science, 358, 2017
3CEC	Crystal structure of a putative antidote protein of plasmid maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at 1.60 A resolution Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, DI(HYDROXYETHYL)ETHER, Putative antidote protein of plasmid maintenance system Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-02-28 Release date: 2008-03-11 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of putative antidote protein of plasmid maintenance system (ZP_00107635.1) from Nostoc punctiforme PCC 73102 at 1.60 A resolution To be published
3CRO	THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3'), PROTEIN (434 CRO) Authors: Mondragon, A, Harrison, S.C. Deposit date: 1990-07-06 Release date: 1991-10-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The phage 434 Cro/OR1 complex at 2.5 A resolution. J.Mol.Biol., 219, 1991
1UTX	Regulation of Cytolysin Expression by Enterococcus faecalis: Role of CylR2 Descriptor: CYLR2, IODIDE ION, SODIUM ION Authors: Razeto, A, Rumpel, S, Pillar, C.M, Gilmore, M.S, Becker, S, Zweckstetter, M. Deposit date: 2003-12-12 Release date: 2004-09-16 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and DNA-Binding Properties of the Cytolysin Regulator CylR2 from Enterococcus Faecalis Embo J., 23, 2004

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