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1TS6
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Structure of the pB2 intermediate from time-resolved Laue crystallography
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
登録日2004-06-21
公開日2005-07-05
最終更新日2021-07-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1TS7
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Structure of the pR cis wobble and pR E46Q intermediates from time-resolved Laue crystallography
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Ihee, H, Rajagopal, S, Srajer, V, Pahl, R, Anderson, S, Schmidt, M, Schotte, F, Anfinrud, P.A, Wulff, M, Moffat, K.
登録日2004-06-21
公開日2005-07-05
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1XFQ
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structure of the blue shifted intermediate state of the photoactive yellow protein lacking the N-terminal part
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Bernard, C, Houben, K, Derix, N.M, Marks, D, van der Horst, M.A, Hellingwerf, K.J, Boelens, R, Kaptein, R, van Nuland, N.A.
登録日2004-09-15
公開日2005-08-16
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献The solution structure of a transient photoreceptor intermediate: delta25 photoactive yellow protein
STRUCTURE, 13, 2005
1XFN
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BU of 1xfn by Molmil
NMR structure of the ground state of the photoactive yellow protein lacking the N-terminal part
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Bernard, C, Houben, K, Derix, N.M, Marks, D, van der Horst, M.A, Hellingwerf, K.J, Boelens, R, Kaptein, R, van Nuland, N.A.
登録日2004-09-15
公開日2005-08-16
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献The solution structure of a transient photoreceptor intermediate: delta25 photoactive yellow protein
STRUCTURE, 13, 2005
2D01
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BU of 2d01 by Molmil
Wild Type Photoactive Yellow Protein, P65 Form
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Kataoka, M.
登録日2005-07-21
公開日2006-04-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein
Biochemistry, 45, 2006
2D02
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R52Q Mutant of Photoactive Yellow Protein, P65 Form
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Kataoka, M.
登録日2005-07-21
公開日2006-04-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein
Biochemistry, 45, 2006
1UWP
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BU of 1uwp by Molmil
Initial Events in the Photocycle of Photoactive Yellow Protein
分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN, SULFATE ION
著者Kort, R, Hellingwerf, K.J, Ravelli, R.B.G.
登録日2004-02-11
公開日2006-05-10
最終更新日2019-02-27
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Initial events in the photocycle of photoactive yellow protein.
J. Biol. Chem., 279, 2004
2I9V
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Structural role of Y98 in PYP: effects on fluorescence, gateway and photocycle recovery
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Savvides, S.N, Kyndt, J.
登録日2006-09-06
公開日2007-02-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural role of tyrosine 98 in photoactive yellow protein: effects on fluorescence, gateway, and photocycle recovery.
Biochemistry, 46, 2007
2GJ3
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BU of 2gj3 by Molmil
Crystal structure of the FAD-containing PAS domain of the protein NifL from Azotobacter vinelandii.
分子名称: ETHANOL, FLAVIN-ADENINE DINUCLEOTIDE, Nitrogen fixation regulatory protein, ...
著者Key, J, Hefti, M, Purcell, E, Moffat, K.
登録日2006-03-30
公開日2007-03-06
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism.
Biochemistry, 46, 2007
2CMN
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A Proximal Arginine Residue in the Switching Mechanism of the FixL Oxygen Sensor
分子名称: PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL
著者Gilles-Gonzalez, M.-A, Caceres, A.I, Silva Sousa, E.H, Tomchick, D.R, Brautigam, C.A, Gonzalez, C, Machius, M.
登録日2006-05-11
公開日2007-05-15
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A Proximal Arginine R206 Participates in Switching of the Bradyrhizobium Japonicum Fixl Oxygen Sensor
J.Mol.Biol., 360, 2006
2OWH
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Structure of an early-microsecond photolyzed state of CO-bjFixLH
分子名称: PROTOPORPHYRIN IX CONTAINING FE, Sensor protein fixL
著者Key, J, Srajer, V, Pahl, R, Moffat, K.
登録日2007-02-16
公開日2007-06-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Time-resolved crystallographic studies of the heme domain of the oxygen sensor FixL: structural dynamics of ligand rebinding and their relation to signal transduction.
Biochemistry, 46, 2007
2OWJ
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Structure of an early-microsecond photolyzed state of CO-bjFixLH, dark state
分子名称: CARBON MONOXIDE, PROTOPORPHYRIN IX CONTAINING FE, Sensor protein fixL
著者Key, J, Srajer, V, Pahl, R, Moffat, K.
登録日2007-02-16
公開日2007-06-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Time-resolved crystallographic studies of the heme domain of the oxygen sensor FixL: structural dynamics of ligand rebinding and their relation to signal transduction.
Biochemistry, 46, 2007
3B33
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Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus
分子名称: Sensor protein
著者Osipiuk, J, Sather, A, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2007-10-19
公開日2007-10-30
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献X-ray structure of PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus.
To be Published
2QWS
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BU of 2qws by Molmil
Neutron and X-ray structural studies of short hydrogen bonds in Photoactive Yellow Protein (PYP)
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Fisher, S.Z, Langan, P.
登録日2007-08-10
公開日2008-03-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Neutron and X-ray structural studies of short hydrogen bonds in photoactive yellow protein (PYP)
Acta Crystallogr.,Sect.D, 63, 2007
2QJ5
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BU of 2qj5 by Molmil
PYP ultra-high resolution of a bacterial photoreceptor
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Coureux, P.D, Fan, Z.P, Stojanoff, V, Genick, U.K.
登録日2007-07-06
公開日2008-05-20
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Picometer-scale conformational heterogeneity separates functional from nonfunctional States of a photoreceptor protein.
Structure, 16, 2008
2QJ7
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BU of 2qj7 by Molmil
PYP ultra-high resolution of a bacterial photoreceptor
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Coureux, P.D, Fan, Z.P, Stojanoff, V, Genick, U.K.
登録日2007-07-06
公開日2008-05-20
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Picometer-scale conformational heterogeneity separates functional from nonfunctional States of a photoreceptor protein.
Structure, 16, 2008
2W0N
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Plasticity of PAS domain and potential role for signal transduction in the histidine-kinase DcuS
分子名称: SENSOR PROTEIN DCUS
著者Etzkorn, M, Kneuper, H, Duennwald, P, Vijayan, V, Kraemer, J, Griesinger, C, Becker, S, Unden, G, Baldus, M.
登録日2008-08-19
公開日2008-09-30
最終更新日2024-05-15
実験手法SOLID-STATE NMR
主引用文献Plasticity of the Pas Domain and a Potential Role for Signal Transduction in the Histidine Kinase Dcus.
Nat.Struct.Mol.Biol., 15, 2008
2VV6
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BJFIXLH IN FERRIC FORM
分子名称: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL, ...
著者Ayers, R.A, Moffat, K.
登録日2008-06-04
公開日2008-11-04
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains.
Biochemistry, 47, 2008
2VV8
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Co-bound structure of bjFixLH
分子名称: CARBON MONOXIDE, CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Ayers, R.A, Moffat, K.
登録日2008-06-04
公開日2008-11-04
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains.
Biochemistry, 47, 2008
2VV7
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BJFIXLH IN UNLIGANDED FERROUS FORM
分子名称: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL, ...
著者Ayers, R.A, Moffat, K.
登録日2008-06-04
公開日2008-11-04
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains.
Biochemistry, 47, 2008
2ZOH
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X-ray Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Yamaguchi, S.
登録日2008-05-20
公開日2009-03-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZOI
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Neutron Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Yamaguchi, S.
登録日2008-05-21
公開日2009-03-24
最終更新日2023-11-01
実験手法NEUTRON DIFFRACTION (1.5 Å)
主引用文献Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009
3GEC
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Crystal structure of a tandem PAS domain fragment of Drosophila PERIOD
分子名称: Period circadian protein
著者Yildiz, O, Wolf, E.
登録日2009-02-25
公開日2009-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Structural and functional analyses of PAS domain interactions of the clock proteins Drosophila PERIOD and mouse PERIOD2
Plos Biol., 7, 2009
3A0R
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Crystal structure of histidine kinase ThkA (TM1359) in complex with response regulator protein TrrA (TM1360)
分子名称: MERCURY (II) ION, Response regulator, Sensor protein
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-24
公開日2009-10-20
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3A0V
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PAS domain of histidine kinase ThkA (TM1359) (SeMet, F486M/F489M)
分子名称: ETHANOL, Sensor protein
著者Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
登録日2009-03-24
公開日2009-10-20
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009

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