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6UN2
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Crystal structure of photoactive yellow protein (PYP); C69U construct (selenocysteine incorporation)
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Lin, C.-Y, Romei, M.G, Boxer, S.G.
登録日2019-10-10
公開日2020-07-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms.
J Photochem Photobiol A Chem, 401, 2020
6UN0
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BU of 6un0 by Molmil
Crystal structure of photoactive yellow protein (PYP); F96(4-IF) construct with 3-Br-p-coumaric acid chromophore
分子名称: (2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
著者Lin, C.-Y, Romei, M.G, Boxer, S.G.
登録日2019-10-10
公開日2020-07-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (0.85 Å)
主引用文献Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms.
J Photochem Photobiol A Chem, 401, 2020
6MHN
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BU of 6mhn by Molmil
Photoactive Yellow Protein with covalently bound 3-chloro-4-hydroxycinnamic acid chromophore
分子名称: (2E)-3-(3-chloro-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
著者Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
登録日2018-09-18
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
6MHI
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BU of 6mhi by Molmil
Photoactive Yellow Protein with covalently bound 3,5-dichloro-4-hydroxycinnamic acid chromophore
分子名称: (2E)-3-(3,5-dichloro-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
著者Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
登録日2018-09-18
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
6MKT
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BU of 6mkt by Molmil
Photoactive Yellow Protein with 3-chlorotyrosine substituted at position 42
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
登録日2018-09-26
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
6MMD
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BU of 6mmd by Molmil
Photoactive Yellow Protein with 3,5-dichlorotyrosine substituted at position 42
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Thomson, B.D, Both, J, Wu, Y, Parrish, R.M, Martinez, T, Boxer, S.G.
登録日2018-09-30
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.228 Å)
主引用文献Perturbation of Short Hydrogen Bonds in Photoactive Yellow Protein via Noncanonical Amino Acid Incorporation.
J.Phys.Chem.B, 123, 2019
2GJ3
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BU of 2gj3 by Molmil
Crystal structure of the FAD-containing PAS domain of the protein NifL from Azotobacter vinelandii.
分子名称: ETHANOL, FLAVIN-ADENINE DINUCLEOTIDE, Nitrogen fixation regulatory protein, ...
著者Key, J, Hefti, M, Purcell, E, Moffat, K.
登録日2006-03-30
公開日2007-03-06
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism.
Biochemistry, 46, 2007
7SPV
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BU of 7spv by Molmil
Crystal structure of photoactive yellow protein (PYP); F92oCNF construct
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Weaver, J.B, Kirsh, J.M, Boxer, S.G.
登録日2021-11-03
公開日2022-05-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments.
J.Am.Chem.Soc., 144, 2022
7SPW
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BU of 7spw by Molmil
Crystal structure of photoactive yellow protein (PYP); F62oCNF construct
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Weaver, J.B, Kirsh, J.M, Boxer, S.G.
登録日2021-11-03
公開日2022-05-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments.
J.Am.Chem.Soc., 144, 2022
7SJJ
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BU of 7sjj by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF construct
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Weaver, J.B, Kirsh, J.M, Boxer, S.G.
登録日2021-10-17
公開日2022-05-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments.
J.Am.Chem.Soc., 144, 2022
7SPX
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BU of 7spx by Molmil
Crystal structure of photoactive yellow protein (PYP); F28oCNF construct
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Weaver, J.B, Kirsh, J.M, Boxer, S.G.
登録日2021-11-03
公開日2022-05-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献Nitrile Infrared Intensities Characterize Electric Fields and Hydrogen Bonding in Protic, Aprotic, and Protein Environments.
J.Am.Chem.Soc., 144, 2022
1EW0
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BU of 1ew0 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)
分子名称: FIXL, PROTOPORPHYRIN IX CONTAINING FE
著者Miyatake, H, Mukai, M, Park, S.-Y, Adachi, S, Tamura, K, Nakamura, H, Nakamura, K, Tsuchiya, T, Iizuka, T, Shiro, Y.
登録日2000-04-21
公開日2000-05-10
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
6P5G
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BU of 6p5g by Molmil
Photoactive Yellow Protein PYP Dark Full
分子名称: Photoactive yellow protein
著者Pandey, S, Schmidt, M.
登録日2019-05-30
公開日2019-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P4I
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BU of 6p4i by Molmil
Photoactive Yellow Protein PYP 10ps
分子名称: Photoactive yellow protein
著者Pandey, S, Schmidt, M.
登録日2019-05-27
公開日2019-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P5F
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BU of 6p5f by Molmil
Photoactive Yellow Protein PYP Pure Dark
分子名称: Photoactive yellow protein
著者Pandey, S, Schmidt, M.
登録日2019-05-30
公開日2019-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P5E
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BU of 6p5e by Molmil
Photoactive Yellow Protein PYP 80ps
分子名称: Photoactive yellow protein
著者Pandey, S, Schmidt, M.
登録日2019-05-30
公開日2019-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
6P5D
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BU of 6p5d by Molmil
Photoactive Yellow Protein PYP 30ps
分子名称: Photoactive yellow protein
著者Pandey, S, Schmidt, M.
登録日2019-05-30
公開日2019-09-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Time-resolved serial femtosecond crystallography at the European XFEL.
Nat.Methods, 17, 2020
1F9I
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BU of 1f9i by Molmil
CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT Y42F
分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
著者Brudler, R, Meyer, T.E, Genick, U.K, Tollin, G, Getzoff, E.D.
登録日2000-07-10
公開日2000-07-21
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein.
Biochemistry, 39, 2000
1F98
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BU of 1f98 by Molmil
CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT T50V
分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
著者Brudler, R, Meyer, T.E, Genick, U.K, Tollin, G, Getzoff, E.D.
登録日2000-07-07
公開日2000-07-21
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein.
Biochemistry, 39, 2000
6QPJ
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BU of 6qpj by Molmil
Human CLOCK PAS-A domain
分子名称: Circadian locomoter output cycles protein kaput
著者Kwon, H, Freeman, S.L, Moody, P.C.E, Raven, E.L, Basran, J.
登録日2019-02-14
公開日2019-09-25
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.315 Å)
主引用文献Heme binding to human CLOCK affects interactions with the E-box.
Proc.Natl.Acad.Sci.USA, 116, 2019
2ZOH
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BU of 2zoh by Molmil
X-ray Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Yamaguchi, S.
登録日2008-05-20
公開日2009-03-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009
1GSV
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BU of 1gsv by Molmil
Crystal structure of the P65 crystal form of photoactive yellow protein G47S mutant
分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
著者Van Aalten, D.M.F, Crielaard, W, Hellingwerf, K.J, Joshua-Tor, L.
登録日2002-01-08
公開日2002-02-14
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Engineering Photocycle Dynamics: Crystal Structures and Kinetics of Three Photoactive Yellow Protein Hinge-Bending Mutants
J.Biol.Chem., 227, 2002
1GSX
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CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN G47S/G51S MUTANT
分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
著者Van Aalten, D.M.F, Crielaard, W, Hellingwerf, K.J, Joshua-Tor, L.
登録日2002-01-09
公開日2002-02-14
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Engineering Photocycle Dynamics: Crystal Structures and Kinetics of Three Photoactive Yellow Protein Hinge-Bending Mutants
J.Biol.Chem., 227, 2002
1GSW
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BU of 1gsw by Molmil
CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN G51S MUTANT
分子名称: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
著者Van Aalten, D.M.F, Crielaard, W, Hellingwerf, K.J, Joshua-Tor, L.
登録日2002-01-09
公開日2002-02-14
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Engineering Photocycle Dynamics: Crystal Structures and Kinetics of Three Photoactive Yellow Protein Hinge-Bending Mutants
J.Biol.Chem., 227, 2002
2ZOI
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BU of 2zoi by Molmil
Neutron Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
分子名称: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
著者Yamaguchi, S.
登録日2008-05-21
公開日2009-03-24
最終更新日2023-11-01
実験手法NEUTRON DIFFRACTION (1.5 Å)
主引用文献Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009

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