PDB: 113 件ウェブページステータス検索Chemie searchBIRD

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6N6I	Human REXO2 bound to pGG 分子名称: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.431 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6A	Vibrio cholerae Oligoribonuclease bound to pGG 分子名称: Oligoribonuclease, RNA (5'-R(P*GP*G)-3'), SODIUM ION 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6G	Vibrio cholerae Oligoribonuclease bound to pCG 分子名称: Oligoribonuclease, RNA (5'-R(P*CP*G)-3'), SODIUM ION 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.018 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6E	Vibrio cholerae Oligoribonuclease bound to pGA 分子名称: RNA (5'-R(P*GP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.578 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
4XR7	Structure of the Saccharomyces cerevisiae PAN2-PAN3 core complex 分子名称: PAB-dependent poly(A)-specific ribonuclease subunit PAN2, PAB-dependent poly(A)-specific ribonuclease subunit PAN3 著者 Schafer, I.B, Rode, M, Bonneau, F, Schussler, S, Conti, E. 登録日 2015-01-20 公開日 2015-01-28 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.796 Å) 主引用文献 The structure of the Pan2-Pan3 core complex reveals cross-talk between deadenylase and pseudokinase. Nat. Struct. Mol. Biol., 21, 2014
2P1J	Crystal structure of a polC-type DNA polymerase III exonuclease domain from Thermotoga maritima 分子名称: DNA polymerase III polC-type 著者 Bonanno, J.B, Rutter, M, Bain, K.T, Izuka, M, Sridhar, V, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2007-03-05 公開日 2007-03-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a polC-type DNA polymerase III exonuclease domain from Thermotoga maritima To be Published
2QXF	Product bound structure of exonuclease I at 1.5 angstrom resolution 分子名称: Exodeoxyribonuclease I, MAGNESIUM ION, SODIUM ION, ... 著者 Busam, R.D. 登録日 2007-08-11 公開日 2008-01-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of Escherichia coli exonuclease I in complex with thymidine 5'-monophosphate. Acta Crystallogr.,Sect.D, 64, 2008
2IDO	Structure of the E. coli Pol III epsilon-Hot proofreading complex 分子名称: 1,2-ETHANEDIOL, DNA polymerase III epsilon subunit, Hot protein, ... 著者 Kirby, T.W, Harvey, S, DeRose, E.F, Chalov, S, Chikova, A.K, Perrino, F.W, Schaaper, R.M, London, R.E, Pedersen, L.C. 登録日 2006-09-15 公開日 2006-11-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of the Escherichia coli DNA polymerase III epsilon-HOT proofreading complex. J.Biol.Chem., 281, 2006
4Q8H	Structure of the Saccharomyces cerevisiae PAN2 pseudoubiquitin-hydrolase-RNase module 分子名称: MAGNESIUM ION, PAB-dependent poly(A)-specific ribonuclease subunit PAN2 著者 Schaefer, I.B, Conti, E. 登録日 2014-04-27 公開日 2014-06-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The structure of the Pan2-Pan3 core complex reveals cross-talk between deadenylase and pseudokinase. Nat.Struct.Mol.Biol., 21, 2014
4QOZ	Crystal structure of the histone mRNA stem-loop, stem-loop binding protein (phosphorylated), and 3'hExo ternary complex 分子名称: 3'-5' exoribonuclease 1, Histone RNA hairpin-binding protein, histone mRNA stem-loop 著者 Tan, D, Tong, L. 登録日 2014-06-21 公開日 2014-07-23 最終更新日 2014-08-06 実験手法 X-RAY DIFFRACTION (2.304 Å) 主引用文献 Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation. Proc.Natl.Acad.Sci.USA, 111, 2014
4RG8	Structural and biochemical studies of a moderately thermophilic Exonuclease I from Methylocaldum szegediense 分子名称: Exonuclease I, MAGNESIUM ION 著者 Fei, L, Tian, S, Moysey, R, Misca, M, Barker, J.J, Smith, M.A, McEwan, P.A, Pilka, E.S, Crawley, L, Evans, T, Sun, D. 登録日 2014-09-29 公開日 2015-02-25 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 Structural and Biochemical Studies of a Moderately Thermophilic Exonuclease I from Methylocaldum szegediense. Plos One, 10, 2015
1FXX	THE STRUCTURE OF EXONUCLEASE I SUGGESTS HOW PROCESSIVITY IS ACHIEVED 分子名称: EXONUCLEASE I, GLYCEROL, MAGNESIUM ION, ... 著者 Breyer, W.A, Matthews, B.W. 登録日 2000-09-27 公開日 2000-12-06 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of Escherichia coli exonuclease I suggests how processivity is achieved. Nat.Struct.Biol., 7, 2000
3HL8	Crystal structure of exonuclease I in complex with inhibitor BCBP 分子名称: (5R)-3-tert-butyl-1-(6-chloro-1,3-benzothiazol-2-yl)-4,5-dihydro-1H-pyrazol-5-ol, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ... 著者 Satyshur, K.A. 登録日 2009-05-27 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Small-molecule tools for dissecting the roles of SSB/protein interactions in genome maintenance Proc.Natl.Acad.Sci.USA, 107, 2010
3HP9	Crystal structure of SSB/Exonuclease I in complex with inhibitor CFAM 分子名称: 1,2-ETHANEDIOL, 2-{[2-chloro-5-(trifluoromethyl)phenyl]amino}-5-methoxybenzoic acid, DIMETHYL SULFOXIDE, ... 著者 Satyshur, K.A. 登録日 2009-06-03 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Small-molecule tools for dissecting the roles of SSB/protein interactions in genome maintenance Proc.Natl.Acad.Sci.USA, 107, 2010
4CZW	Structure of the Neurospora crassa Pan2 catalytic unit (protease and nuclease domain) 分子名称: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2, ZINC ION 著者 Christie, M, Izaurralde, E, Weichenrieder, O. 登録日 2014-04-22 公開日 2014-06-04 最終更新日 2014-07-16 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 An Asymmetric Pan3 Dimer Recruits a Single Pan2 Exonuclease to Mediate Mrna Deadenylation and Decay. Nat.Struct.Mol.Biol., 21, 2014
2XY8	Paramagnetic-based NMR structure of the complex between the N- terminal epsilon domain and the theta domain of the DNA polymerase III 分子名称: CALCIUM ION, DNA POLYMERASE III SUBUNIT EPSILON, DNA POLYMERASE III SUBUNIT THETA 著者 Schmitz, C, Bonvin, A.M.J.J. 登録日 2010-11-16 公開日 2011-06-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Protein-Protein Haddocking Using Exclusively Pseudocontact Shifts. J.Biomol.NMR, 50, 2011
1ZBH	3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease 分子名称: 3'-5' exonuclease ERI1, 5'-R(*CP*CP*GP*GP*CP*UP*CP*UP*UP*UP*UP*CP*AP*GP*AP*GP*CP*CP*GP*G)-3', ADENOSINE MONOPHOSPHATE, ... 著者 Cheng, Y, Patel, D.J. 登録日 2005-04-08 公開日 2006-09-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for 3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease, a human nuclease that also targets siRNA To be Published
1ZBU	crystal structure of full-length 3'-exonuclease 分子名称: 3'-5' exonuclease ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION 著者 Cheng, Y, Patel, D.J. 登録日 2005-04-08 公開日 2006-09-19 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.998 Å) 主引用文献 Structural basis for 3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease, a human nuclease that also targets siRNA To be Published
3C95	Exonuclease I (apo) 分子名称: Exodeoxyribonuclease I, MAGNESIUM ION 著者 Keck, J.L, Lu, D. 登録日 2008-02-15 公開日 2008-07-08 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural basis of Escherichia coli single-stranded DNA-binding protein stimulation of exonuclease I. Proc.Natl.Acad.Sci.USA, 105, 2008
4HCC	The zinc ion bound form of crystal structure of E.coli ExoI-ssDNA complex 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, ISOPROPYL ALCOHOL, ... 著者 Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W. 登録日 2012-09-29 公開日 2013-10-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.96 Å) 主引用文献 The structures of Escherichia coli exonuclease I in complex with the single strand DNA To be published
3C94	ExoI/SSB-Ct complex 分子名称: Exodeoxyribonuclease I, MAGNESIUM ION, Single-stranded DNA-binding C-terminal tail peptide 著者 Lu, D, Keck, J.L. 登録日 2008-02-15 公開日 2008-07-08 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis of Escherichia coli single-stranded DNA-binding protein stimulation of exonuclease I. Proc.Natl.Acad.Sci.USA, 105, 2008
4HCB	The metal-free form of crystal structure of E.coli ExoI-ssDNA complex 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, GLYCEROL, ... 著者 Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W. 登録日 2012-09-29 公開日 2013-10-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The structures of Escherichia coli exonuclease I in complex with the single strand DNA To be published
4JS4	Crystal structure of E. coli Exonuclease I in complex with a dA16 oligonucleotide 分子名称: Exodeoxyribonuclease I, SULFATE ION, dT16 oligonucleotide 著者 Bell, C.E. 登録日 2013-03-22 公開日 2013-05-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion. Nucleic Acids Res., 41, 2013
4JS5	Crystal structure of E. coli Exonuclease I in complex with a dT13 oligonucleotide 分子名称: Exodeoxyribonuclease I, SULFATE ION, dT13 oligonucleotide 著者 Bell, C.E. 登録日 2013-03-22 公開日 2013-05-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion. Nucleic Acids Res., 41, 2013
4JRQ	Crystal structure of E. coli Exonuclease I in complex with a 5cy-dA13 oligonucleotide 分子名称: 5cy-dA13, Exodeoxyribonuclease I, SULFATE ION 著者 Bell, C.E. 登録日 2013-03-21 公開日 2013-05-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion. Nucleic Acids Res., 41, 2013

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