Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2QED
DownloadVisualize
BU of 2qed by Molmil
Crystal structure of Salmonella thyphimurium LT2 glyoxalase II
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Hydroxyacylglutathione hydrolase
Authors:Leite, N.R, Campos Bermudez, V.A, Krogh, R, Oliva, G, Soncini, F.C, Vila, A.J.
Deposit date:2007-06-25
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Biochemical and Structural Characterization of Salmonella typhimurium Glyoxalase II: New Insights into Metal Ion Selectivity
Biochemistry, 46, 2007
8CGL
DownloadVisualize
BU of 8cgl by Molmil
Cryo-EM structure of RNase J from Helicobacter pylori
Descriptor: Ribonuclease J
Authors:Lulla, A, Luisi, B.F.
Deposit date:2023-02-05
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Acetylation regulates the oligomerization state and activity of RNase J, the Helicobacter pylori major ribonuclease.
Nat Commun, 14, 2023
3IEM
DownloadVisualize
BU of 3iem by Molmil
Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog
Descriptor: CITRATE ANION, RNA (5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3'), Ribonuclease TTHA0252, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitus, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-23
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog
To be Published
3IEK
DownloadVisualize
BU of 3iek by Molmil
Crystal Structure of native TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-22
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure of native TTHA0252 from Thermus thermophilus HB8
To be Published
3IEL
DownloadVisualize
BU of 3iel by Molmil
Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R.
Deposit date:2009-07-23
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
To be Published
3IE1
DownloadVisualize
BU of 3ie1 by Molmil
Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA
Descriptor: CITRATE ANION, RNA (5'-R(P*UP*UP*UP*U)-3'), Ribonuclease TTHA0252, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA
To be Published
3IE2
DownloadVisualize
BU of 3ie2 by Molmil
Crystal Structure of H400V mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of H400V mutant TTHA0252 from Thermus thermophilus HB8
To be Published
3IDZ
DownloadVisualize
BU of 3idz by Molmil
Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of S378Q mutant TTHA0252 from Thermus thermophilus HB8
To be Published
3IE0
DownloadVisualize
BU of 3ie0 by Molmil
Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Crystal Structure of S378Y mutant TTHA0252 from Thermus thermophilus HB8
To be Published
6I1D
DownloadVisualize
BU of 6i1d by Molmil
Structure of the Ysh1-Mpe1 nuclease complex from S.cerevisiae
Descriptor: Endoribonuclease YSH1, GLYCEROL, Protein MPE1, ...
Authors:Hill, C.H, Boreikaite, V, Kumar, A, Casanal, A, Kubik, P, Degliesposti, G, Maslen, S, Mariani, A, von Loeffelholz, O, Girbig, M, Skehel, M, Passmore, L.A.
Deposit date:2018-10-28
Release date:2019-02-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Activation of the Endonuclease that Defines mRNA 3' Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex.
Mol.Cell, 73, 2019
6K6W
DownloadVisualize
BU of 6k6w by Molmil
Structure of RNase J2 from Staphylococcus epidermidis
Descriptor: MANGANESE (II) ION, Ribonuclease J 2
Authors:Raj, R, Gopal, B.
Deposit date:2019-06-05
Release date:2020-10-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of RNase J1 from Staphylococcus epidermidis
J.Biol.Chem., 2020
6K6S
DownloadVisualize
BU of 6k6s by Molmil
Structure of RNase J1 from Staphylococcus epidermidis
Descriptor: MANGANESE (II) ION, Ribonuclease J 1
Authors:Raj, R, Gopal, B.
Deposit date:2019-06-04
Release date:2020-10-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.993 Å)
Cite:Structure of RNase J1 from Staphylococcus epidermidis
J.Biol.Chem., 2020
3ZQ4
DownloadVisualize
BU of 3zq4 by Molmil
Unusual, dual endo- and exo-nuclease activity in the degradosome explained by crystal structure analysis of RNase J1
Descriptor: CALCIUM ION, RIBONUCLEASE J 1, ZINC ION
Authors:Newman, J.A, Hewitt, L, Rodrigues, C, Solovyova, A, Harwood, C.R, Lewis, R.J.
Deposit date:2011-06-07
Release date:2011-09-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Unusual, Dual Endo- and Exonuclease Activity in the Degradosome Explained by Crystal Structure Analysis of Rnase J1.
Structure, 19, 2011
4AD9
DownloadVisualize
BU of 4ad9 by Molmil
Crystal structure of human LACTB2.
Descriptor: 1,2-ETHANEDIOL, BETA-LACTAMASE-LIKE PROTEIN 2, ZINC ION
Authors:Allerston, C.K, Krojer, T, Shrestha, B, Burgess Brown, N, Chalk, R, Elkins, J.M, Filippakopoulos, P, Pike, A.C.W, Muniz, J.R.C, Vollmar, M, Arrowsmith, C.H, Weigelt, J, Edwards, A, Bountra, C, von Delft, F, Gileadi, O.
Deposit date:2011-12-22
Release date:2012-02-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Identification of Lactb2, a Metallo-Beta-Lactamase Protein, as a Human Mitochondrial Endoribonuclease
Nucleic Acids Res., 44, 2016
4AXH
DownloadVisualize
BU of 4axh by Molmil
Structure and mechanism of the first inverting alkylsulfatase specific for secondary alkylsulfatases
Descriptor: SEC-ALKYLSULFATASE, SULFATE ION, ZINC ION
Authors:Knaus, T, Schober, M, Faber, K, Macheroux, P, Wagner, U.G.
Deposit date:2012-06-13
Release date:2012-12-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure and Mechanism of an Inverting Alkylsulfatase from Pseudomonas Sp. Dsm6611 Specific for Secondary Alkylsulfates.
FEBS J., 279, 2012
4AV7
DownloadVisualize
BU of 4av7 by Molmil
Structure determination of the double mutant S233Y F250G from the sec- alkyl sulfatase PisA1
Descriptor: SEC-ALKYLSULFATASE, SULFATE ION, ZINC ION
Authors:Knaus, T, Schober, M, Faber, K, Macharaux, P, Wagner, U.
Deposit date:2012-05-24
Release date:2012-12-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and Mechanism of an Inverting Alkylsulfatase from Pseudomonas Sp. Dsm6611 Specific for Secondary Alkylsulfates.
FEBS J., 279, 2012
2XR1
DownloadVisualize
BU of 2xr1 by Molmil
DIMERIC ARCHAEAL CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR WITH N-TERMINAL KH DOMAINS (KH-CPSF) FROM METHANOSARCINA MAZEI
Descriptor: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 KD SUBUNIT, ZINC ION
Authors:Mir-Montazeri, B, Ammelburg, M, Forouzan, D, Lupas, A.N, Hartmann, M.D.
Deposit date:2010-09-08
Release date:2010-10-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal Structure of a Dimeric Archaeal Cleavage and Polyadenylation Specificity Factor.
J.Struct.Biol., 173, 2011
4NUR
DownloadVisualize
BU of 4nur by Molmil
Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9
Descriptor: MAGNESIUM ION, PSdsA, ZINC ION
Authors:Sun, L.F, Su, Y.T, Zhao, Y.H, Cai, Z.X, Wu, Y.
Deposit date:2013-12-04
Release date:2014-12-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.761 Å)
Cite:Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9
To be Published
2YHE
DownloadVisualize
BU of 2yhe by Molmil
Structure determination of the stereoselective inverting sec- alkylsulfatase Pisa1 from Pseudomonas sp.
Descriptor: SEC-ALKYL SULFATASE, SULFATE ION, ZINC ION
Authors:Kepplinger, B, Faber, K, Macheroux, P, Schober, M, Knaus, T, Wagner, U.G.
Deposit date:2011-04-29
Release date:2012-05-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure and Mechanism of an Inverting Alkylsulfatase from Pseudomonas Sp. Dsm6611 Specific for Secondary Alkylsulfates.
FEBS J., 279, 2012
2ZO4
DownloadVisualize
BU of 2zo4 by Molmil
Crystal structure of metallo-beta-lactamase family protein TTHA1429 from Thermus thermophilus HB8
Descriptor: Metallo-beta-lactamase family protein, ZINC ION
Authors:Yamamura, A, Nagata, K, Agari, Y, Ebihara, A, Nakagawa, N, Yokoyama, S, Kuramitsu, S, Tanokura, M.
Deposit date:2008-05-05
Release date:2009-03-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of TTHA1429, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8.
Proteins, 73, 2008
4PDX
DownloadVisualize
BU of 4pdx by Molmil
Crystal structure of Escherchia coli uncharacterized protein YjcS
Descriptor: GLYCEROL, Putative alkyl/aryl-sulfatase YjcS, SULFATE ION
Authors:Liang, Y.J, Gao, Z.Q, Liu, Q.S, Dong, Y.H.
Deposit date:2014-04-22
Release date:2015-04-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Escherchia coli uncharacterized protein YjcS
To Be Published
3A4Y
DownloadVisualize
BU of 3a4y by Molmil
Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8
Descriptor: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
Authors:Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-07-22
Release date:2009-08-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8
to be published
5I0P
DownloadVisualize
BU of 5i0p by Molmil
Crystal Structure of a Beta-lactamase domain protein from Burkholderia ambifaria
Descriptor: Beta-lactamase domain protein, ZINC ION
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2016-02-04
Release date:2016-02-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of a Beta-lactamase domain protein from Burkholderia ambifaria
to be published
5AIJ
DownloadVisualize
BU of 5aij by Molmil
P. aeruginosa SdsA hexagonal polymorph
Descriptor: ALKYL SULFATASE, GLYCEROL, ZINC ION
Authors:De la Mora, E, Flores-Hernandez, E, Jakoncic, J, Stojanoff, V, Sanchez-Puig, N, Moreno, A.
Deposit date:2015-02-13
Release date:2015-10-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Sdsa Polymorph Isolation and Improvement of Their Crystal Quality Using Nonconventional Crystallization Techniques
J.Appl.Crystallogr., 48, 2015
5A0V
DownloadVisualize
BU of 5a0v by Molmil
Catalysis and 5' end sensing by ribonuclease RNase J of the metallo- beta-lactamase family
Descriptor: 5'-R(*CP*GP*CP*CP*UP*CP)-3', CYTIDINE-5'-MONOPHOSPHATE, RIBONUCLEASE J, ...
Authors:Pei, X.Y, Bralley, P, Jones, G.H, Luisi, B.F.
Deposit date:2015-04-23
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Linkage of Catalysis and 5' End Recognition in Ribonuclease Rnase J
Nucleic Acids Res., 43, 2015

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon