PDB: 154 件ウェブページステータス検索Chemie searchBIRD

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5XLF	Crystal structure of aerobically purified and aerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... 著者 Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y. 登録日 2017-05-10 公開日 2018-06-06 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2. J. Inorg. Biochem., 177, 2017
5XLG	Crystal structure of anaerobically purified and aerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ... 著者 Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y. 登録日 2017-05-10 公開日 2018-06-06 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2. J. Inorg. Biochem., 177, 2017
5XLE	Crystal structure of anaerobically purified and anaerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ... 著者 Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y. 登録日 2017-05-10 公開日 2018-06-06 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2. J. Inorg. Biochem., 177, 2017
5XLH	Crystal structure of aerobically purified and aerobically crystallized for 12weeks D. vulgaris Miyazaki F [NiFe]-hydrogenase 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... 著者 Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y. 登録日 2017-05-10 公開日 2018-06-06 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2. J. Inorg. Biochem., 177, 2017
5XVD	[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an air-oxidized condition 分子名称: FE3-S4 CLUSTER, FE4-S4-O CLUSTER, GLYCEROL, ... 著者 Nishikawa, K, Matsuura, H, Muhd Noor, N.D, Tai, H, Hirota, S, Kim, J, Kang, J, Tateno, M, Yoon, K.S, Ogo, S, Shomura, Y, Higuchi, Y. 登録日 2017-06-27 公開日 2018-06-27 最終更新日 2019-07-10 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Redox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2. Chem.Commun.(Camb.), 54, 2018
5XVB	[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an H2-reduced condition 分子名称: FE3-S4 CLUSTER, GLYCEROL, IRON/SULFUR CLUSTER, ... 著者 Nishikawa, K, Matsuura, H, Muhd Noor, N.D, Tai, H, Hirota, S, Kim, J, Kang, J, Tateno, M, Yoon, K.S, Ogo, S, Shomura, Y, Higuchi, Y. 登録日 2017-06-27 公開日 2018-06-27 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Redox-dependent conformational changes of a proximal [4Fe-4S] cluster in Hyb-type [NiFe]-hydrogenase to protect the active site from O2. Chem.Commun.(Camb.), 54, 2018
5Y34	Membrane-bound respiratory [NiFe]-hydrogenase from Hydrogenovibrio marinus in a ferricyanide-oxidized condition 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ... 著者 Shomura, Y, Yoon, K.S, Nishihara, H, Higuchi, Y. 登録日 2017-07-27 公開日 2017-08-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase Nature, 479, 2011
5Y4N	Crystal structure of aerobically purified and anaerobically crystallized D. vulgaris Miyazaki F [NiFe]-hydrogenase 分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... 著者 Nishikawa, K, Mochida, S, Hiromoto, T, Shibata, N, Higuchi, Y. 登録日 2017-08-04 公開日 2018-08-08 最終更新日 2020-02-19 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Ni-elimination from the active site of the standard [NiFe]‐hydrogenase upon oxidation by O2. J.Inorg.Biochem., 177, 2017
5YY0	Crystal structure of the HyhL-HypA complex (form II) 分子名称: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ... 著者 Kwon, S, Watanabe, S, Nishitani, Y, Miki, K. 登録日 2017-12-07 公開日 2018-06-20 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (3.243 Å) 主引用文献 Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YXY	Crystal structure of the HyhL-HypA complex (form I) 分子名称: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ... 著者 Kwon, S, Watanabe, S, Nishitani, Y, Miki, K. 登録日 2017-12-07 公開日 2018-06-20 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (3.299 Å) 主引用文献 Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4UE3	The Mechanism of Hydrogen Activation by NiFe-hydrogenases and the Importance of the active site Arginine 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Evans, R.M, Wehlin, S.A.M, Nomerotskaia, E, Sargent, F, Carr, S.B, Phillips, S.E.V, Armstrong, F.A. 登録日 2014-12-15 公開日 2014-12-24 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Mechanism of Hydrogen Activation by [Nife] Hydrogenases. Nat.Chem.Biol., 12, 2016
4U9I	High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ... 著者 Ogata, H, Nishikawa, K, Lubitz, W. 登録日 2014-08-06 公開日 2015-01-21 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.06 Å) 主引用文献 Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase. Nature, 520, 2015
4U9H	Ultra High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ... 著者 Ogata, H, Nishikawa, K, Lubitz, W. 登録日 2014-08-06 公開日 2015-01-21 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (0.89 Å) 主引用文献 Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase. Nature, 520, 2015
4UCW	Structure of the T18V small subunit mutant of D. fructosovorans NiFe- hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. 登録日 2014-12-04 公開日 2015-02-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A Threonine Stabilizes the Nic and Nir Catalytic Intermediates of [Nife]-Hydrogenase. J.Biol.Chem., 290, 2015
4UCX	Structure of the T18G small subunit mutant of D. fructosovorans NiFe- hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. 登録日 2014-12-05 公開日 2015-02-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase. J. Biol. Chem., 290, 2015
4UEW	Structure of H2-treated anaerobically purified D. fructosovorans NiFe- hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Volbeda, A, Martin, L, Liebgott, P.-P, Fontecilla-Camps, J.C. 登録日 2014-12-20 公開日 2015-03-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 [NiFe]-hydrogenases revisited: nickel-carboxamido bond formation in a variant with accrued O2-tolerance and a tentative re-interpretation of Ni-SI states. Metallomics, 7, 2015
4UPV	Low X-ray dose structure of a Ni-A Ni-Sox mixture of the D. fructosovorans NiFe-hydrogenase L122A mutant 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. 登録日 2014-06-18 公開日 2014-10-29 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states. J. Biol. Inorg. Chem., 20, 2015
4UCQ	Structure of the T18D small subunit mutant of D. fructosovorans NiFe- hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. 登録日 2014-12-04 公開日 2015-02-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase. J. Biol. Chem., 290, 2015
4UEQ	Structure of the V74C large subunit mutant of D. fructosovorans NiFe- hydrogenase 分子名称: CALCIUM ION, CARBONATE ION, CARBONMONOXIDE-(DICYANO) IRON, ... 著者 Volbeda, A, Martin, L, Liebgott, P.-P, Fontecilla-Camps, J.C. 登録日 2014-12-18 公開日 2015-03-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 [NiFe]-hydrogenases revisited: nickel-carboxamido bond formation in a variant with accrued O2-tolerance and a tentative re-interpretation of Ni-SI states. Metallomics, 7, 2015
4UE2	Structure of air-treated anaerobically purified D. fructosovorans NiFe-hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Volbeda, A, Martin, L, Liebgott, P.-P, Fontecilla-Camps, J.C. 登録日 2014-12-15 公開日 2015-03-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 [Nife]-Hydrogenases Revisited: Nickel-Carboxamido Bond Formation in a Variant with Accrued O2-Tolerance and a Tentative Re-Interpretation of Ni-Si States. Metallomics, 7, 2015
4UE6	Structure of methylene blue-treated anaerobically purified D. fructosovorans NiFe-hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Volbeda, A, Martin, L, Liebgott, P.-P, Fontecilla-Camps, J.C. 登録日 2014-12-16 公開日 2015-03-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 [Nife]-Hydrogenases Revisited: Nickel-Carboxamido Bond Formation in a Variant with Accrued O2-Tolerance and a Tentative Re-Interpretation of Ni-Si States. Metallomics, 7, 2015
4UD6	Structure of methylviologen-treated anaerobically purified D. fructosovorans NiFe-hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Volbeda, A, Martin, L, Liebgott, P.-P, Fontecilla-Camps, J.C. 登録日 2014-12-08 公開日 2015-03-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 [NiFe]-hydrogenases revisited: nickel-carboxamido bond formation in a variant with accrued O2-tolerance and a tentative re-interpretation of Ni-SI states. Metallomics, 7, 2015
4UD2	Structure of anaerobically purified D. fructosovorans NiFe- hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Volbeda, A, Martin, L, Liebgott, P.-P, Fontecilla-Camps, J.C. 登録日 2014-12-05 公開日 2015-03-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 [Nife]-Hydrogenases Revisited: Nickel-Carboxamido Bond Formation in a Variant with Accrued O2-Tolerance and a Tentative Re-Interpretation of Ni-Si States. Metallomics, 7, 2015
4UPE	Structure of the unready Ni-A state of the S499C mutant of D. fructosovorans NiFe-hydrogenase 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CARBONMONOXIDE-(DICYANO) IRON, ... 著者 Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. 登録日 2014-06-16 公開日 2014-10-29 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states. J. Biol. Inorg. Chem., 20, 2015
7T30	Structure of electron bifurcating Ni-Fe hydrogenase complex HydABCSL in FMN/NAD(H) bound state 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... 著者 Feng, X, Li, H. 登録日 2021-12-06 公開日 2022-03-16 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure and electron transfer pathways of an electron-bifurcating NiFe-hydrogenase. Sci Adv, 8, 2022

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