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1XC8	CRYSTAL STRUCTURE COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND A FAPY-DG CONTAINING DNA Descriptor: 5'-D(*CP*TP*CP*TP*TP*TP*(FOX)P*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3', Formamidopyrimidine-DNA glycosylase, ... Authors: Coste, F, Ober, M, Carell, T, Boiteux, S, Zelwer, C, Castaing, B. Deposit date: 2004-09-01 Release date: 2005-09-06 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase. J.Biol.Chem., 279, 2004
7SLB	[T:Ag+:T--pH 8.5] Metal-mediated DNA base pair in tensegrity triangle Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-24 Release date: 2022-10-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.31 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SLE	[T:Ag+:T--pH 10] Metal-mediated DNA base pair in tensegrity triangle Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-24 Release date: 2022-10-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.39 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SLC	[T:Ag+:T--pH 9] Metal-mediated DNA base pair in tensegrity triangle Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-24 Release date: 2022-10-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.02 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SLD	[T:Ag+:T--pH 9.5] Metal-mediated DNA base pair in tensegrity triangle Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-24 Release date: 2022-10-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.13 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SLG	[T:Ag+:T--pH 11] Metal-mediated DNA base pair in tensegrity triangle Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-24 Release date: 2022-10-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (5.1 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SLF	[T:Ag+:T--pH 10.5] Metal-mediated DNA base pair in tensegrity triangle Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-24 Release date: 2022-10-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.83 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7UBU	Crystal structure of ZMET2 in complex with hemimethylated CAG DNA and a histone H3Kc9me2 peptide Descriptor: 5MC SSDNA, C49 SSDNA, DNA (cytosine-5)-methyltransferase 1, ... Authors: Fang, J, Song, J. Deposit date: 2022-03-15 Release date: 2022-06-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Mechanistic basis for maintenance of CHG DNA methylation in plants. Nat Commun, 13, 2022
4KB1	Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT ) Descriptor: Bulge DNA, MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2013-04-23 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
8S4T	DNA bound structure of PrgE from plasmid pCF10 Descriptor: DNA, PrgE, TRIETHYLENE GLYCOL Authors: Breidenstein, A, Berntsson, R.P.-A. Deposit date: 2024-02-22 Release date: 2024-05-29 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (2.67 Å) Cite: PrgE: an OB-fold protein from plasmid pCF10 with striking differences to prototypical bacterial SSBs. Life Sci Alliance, 7, 2024
7UYN	Crystal structure of B-form alien DNA 5'-CTTBPPBBSSZZSAAG in a host-guest complex with the N-terminal fragment of Moloney murine leukemia virus reverse transcriptase Descriptor: DNA (5'-D(*CP*TP*TP*(IGU)P*(1WA)P*(1WA)P*(IGU)P*(IGU))-3'), DNA (5'-D(P*(JSP)P*(JSP)P*(1W5)P*(1W5)P*(JSP)P*AP*AP*G)-3'), reverse transcriptase Authors: Georgiadis, M.M. Deposit date: 2022-05-06 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structures of 'ALternative Isoinformational ENgineered' DNA in B-form. Philos.Trans.R.Soc.Lond.B Biol.Sci., 378, 2023
7SM5	[T:Ag+/Ag+:T--pH 11] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.84 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
4PDI	Crystal structure of a complex between an inhibited LlFpg and a N7-Benzyl-Fapy-dG containing DNA Descriptor: 2-sulfanyl-1,9-dihydro-6H-purin-6-one, DNA (5'-D(*CP*TP*CP*TP*TP*TP*(SOS)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), ... Authors: Coste, F, Castaing, B. Deposit date: 2014-04-18 Release date: 2015-04-01 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization. Nucleic Acids Res., 42, 2014
7SM6	[U:Hg2+/Hg2+:U--pH 8.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SM0	[T:Hg2+/Hg2+:T--pH 8.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.18 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SM8	[U:Hg2+/Ag+:U--pH 9.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.62 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SM9	[U:Hg2+/Ag+:U--pH 10] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.24 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SMB	[U:Ag+/Ag+:U--pH 11] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.63 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SM4	[T:Hg2+/Ag+:T--pH 10.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (4.01 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SM2	[T:Hg2+/Ag+:T--pH 9.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.92 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SM1	[T:Hg2+/Hg2+:T--pH 9] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.81 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SM7	[U:Hg2+/Ag+:U--pH 9] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SM3	[T:Hg2+/Ag+:T--pH 10] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.74 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
7SMA	[U:Hg2+/Ag+:U--pH 10.5] Metal-mediated DNA base pair in tensegrity triangle in Ag+ and Hg2+ solution Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*UP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*UP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2021-10-25 Release date: 2022-11-23 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.64 Å) Cite: Heterobimetallic Base Pair Programming in Designer 3D DNA Crystals. J.Am.Chem.Soc., 145, 2023
5UI5	Crystal structure of Aquifex aeolicus sigmaN bound to promoter DNA Descriptor: DNA (30-MER), DNA (31-MER), RNA polymerase sigma factor RpoN Authors: Darst, S.A, Campbell, E.A, Rajashankar, K. Deposit date: 2017-01-12 Release date: 2017-02-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Crystal structure of Aquifex aeolicus sigma (N) bound to promoter DNA and the structure of sigma (N)-holoenzyme. Proc. Natl. Acad. Sci. U.S.A., 114, 2017

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