Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8XQU
DownloadVisualize
BU of 8xqu by Molmil
The Crystal Structure of ClpC1-NTD from Biortus.
Descriptor: 1,2-ETHANEDIOL, ATP-dependent Clp protease ATP-binding subunit ClpC1, DI(HYDROXYETHYL)ETHER, ...
Authors:Wang, F, Cheng, W, Lv, Z, Ju, C, Ni, C.
Deposit date:2024-01-05
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Crystal Structure of ClpC1-NTD from Biortus.
To Be Published
6H6T
DownloadVisualize
BU of 6h6t by Molmil
Binary crystal structure of positively and negatively supercharged variants Ftn(pos) and Ftn(neg) from human heavy chain ferritin (propandiol condition, coordination number 8)
Descriptor: ACETATE ION, CHLORIDE ION, FE (III) ION, ...
Authors:Kuenzle, M, Lach, M, Beck, T.
Deposit date:2018-07-30
Release date:2019-08-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Self-assembly of protein crystals into different crystal structures using charged patches on oppositely charged ferritin protein containers
To Be Published
4C8M
DownloadVisualize
BU of 4c8m by Molmil
Binary complex of the large fragment of DNA polymerase I from Thermus Aquaticus with the aritificial base pair d5SICS-dNaM at the postinsertion site (sequence context 2)
Descriptor: GLYCEROL, LARGE FRAGMENT OF TAQ DNA POLYMERASE I, MAGNESIUM ION, ...
Authors:Betz, K, Malyshev, D.A, Lavergne, T, Welte, W, Diederichs, K, Romesberg, F.E, Marx, A.
Deposit date:2013-10-01
Release date:2013-12-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.568 Å)
Cite:Structural Insights Into DNA Replication without Hydrogen Bonds.
J.Am.Chem.Soc., 135, 2013
5ZVB
DownloadVisualize
BU of 5zvb by Molmil
APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dT9)
Descriptor: APEBEC3F/ssDNA-T9, CACODYLATE ION, DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*T)-3'), ...
Authors:Cheng, C, Zhang, T.L, Wang, C.X, Lan, W.X, Ding, J.P, Cao, C.Y.
Deposit date:2018-05-09
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin.J.Chem., 36, 2018
6U3P
DownloadVisualize
BU of 6u3p by Molmil
Binary complex of native hAChE with oxime reactivator LG-703
Descriptor: (2E,2'E)-N,N'-[1,4-diazepane-1,4-diyldi(ethane-2,1-diyl)]bis[2-(hydroxyimino)acetamide], Acetylcholinesterase, DIMETHYL SULFOXIDE
Authors:Kovalevsky, A, Gerlits, O, Radic, Z.
Deposit date:2019-08-22
Release date:2020-02-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Rational design, synthesis, and evaluation of uncharged, "smart" bis-oxime antidotes of organophosphate-inhibited human acetylcholinesterase.
J.Biol.Chem., 295, 2020
5XFR
DownloadVisualize
BU of 5xfr by Molmil
Ternary complex of MTF2, DNA and histone
Descriptor: DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'), Metal-response element-binding transcription factor 2, Peptide from Histone H3.1, ...
Authors:Wang, Z, Li, H.
Deposit date:2017-04-11
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Polycomb-like proteins link the PRC2 complex to CpG islands
Nature, 549, 2017
5ZVA
DownloadVisualize
BU of 5zva by Molmil
APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dC9)
Descriptor: APEBEC3F/ssDNA-C9, CACODYLATE ION, DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*CP*T)-3'), ...
Authors:Cheng, C, Zhang, T.L, Wang, C.X, Lan, W.X, Ding, J.P, Cao, C.Y.
Deposit date:2018-05-09
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin.J.Chem., 36, 2018
5ZVT
DownloadVisualize
BU of 5zvt by Molmil
Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly
Descriptor: C-terminus of outer capsid protein VP5, Core protein VP6, MYRISTIC ACID, ...
Authors:Liu, H, Fang, Q, Cheng, L.
Deposit date:2018-05-12
Release date:2018-07-04
Last modified:2018-07-25
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XFP
DownloadVisualize
BU of 5xfp by Molmil
Binary complex of PHF1 and a double stranded DNA
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'), PHD finger protein 1, ...
Authors:Wang, Z, Li, H.
Deposit date:2017-04-11
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Polycomb-like proteins link the PRC2 complex to CpG islands
Nature, 549, 2017
5XFQ
DownloadVisualize
BU of 5xfq by Molmil
Ternary complex of PHF1, a DNA duplex and a histone peptide
Descriptor: DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'), PHD finger protein 1, Peptide from Histone H3, ...
Authors:Wang, Z, Li, H.
Deposit date:2017-04-11
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Polycomb-like proteins link the PRC2 complex to CpG islands
Nature, 549, 2017
7WKH
DownloadVisualize
BU of 7wkh by Molmil
the grass carp IFNa
Descriptor: Interferon
Authors:Zou, J, WANG, J, Wang, Z.
Deposit date:2022-01-09
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural and Functional Analyses of Type I IFNa Shed Light Into Its Interaction With Multiple Receptors in Fish.
Front Immunol, 13, 2022
7QWQ
DownloadVisualize
BU of 7qwq by Molmil
Ternary complex of ribosome nascent chain with SRP and NAC
Descriptor: 28S rRNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
Authors:Jomaa, A, Gamerdinger, M, Hsieh, H, Wallisch, A, Chandrasekaran, V, Ulusoy, Z, Scaiola, A, Hegde, R, Shan, S, Ban, N, Deuerling, E.
Deposit date:2022-01-25
Release date:2022-03-16
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Mechanism of signal sequence handover from NAC to SRP on ribosomes during ER-protein targeting.
Science, 375, 2022
5Y91
DownloadVisualize
BU of 5y91 by Molmil
The structure of the MHC class I molecule of bony fishes provides insights into the conserved nature of the antigen-presenting system
Descriptor: Beta-2-microglobulin, MHC class I antigen, PEPTIDE PHE-ALA-ASN-PHE-CYS-LEU-MET-MET-ILE
Authors:Zhaosan, C, Nianzhi, Z, Chun, X.
Deposit date:2017-08-22
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Crystal structure of bony fish MHC class I complex at 1.9 Angstroms resolution.
To Be Published
5Y7T
DownloadVisualize
BU of 5y7t by Molmil
Quaternary complex of AsqJ-Fe3+-2OG-D-cyclopeptin
Descriptor: (3R)-4-methyl-3-(phenylmethyl)-1,3-dihydro-1,4-benzodiazepine-2,5-dione, 2-OXOGLUTARIC ACID, FE (III) ION, ...
Authors:Liao, H.J.
Deposit date:2017-08-18
Release date:2018-01-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Insights into the Desaturation of Cyclopeptin and its C3 Epimer Catalyzed by a non-Heme Iron Enzyme: Structural Characterization and Mechanism Elucidation.
Angew. Chem. Int. Ed. Engl., 57, 2018
7WQY
DownloadVisualize
BU of 7wqy by Molmil
Crystal structure of grass carp ARF1-GDP complex
Descriptor: ARF1, GUANOSINE-5'-DIPHOSPHATE
Authors:Ouyang, S, Chang, M, Li, P.
Deposit date:2022-01-26
Release date:2023-03-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of grass carp ARF1
To Be Published
7KCI
DownloadVisualize
BU of 7kci by Molmil
DETERMINANTS OF REPRESSOR/OPERATOR RECOGNITION FROM THE STRUCTURE OF THE TRP OPERATOR BINDING SITE
Descriptor: Self-complementary deoxyoligonucleotide decamer d(CCACTAGTGG)
Authors:Shakked, Z, Guzikevich-Guerstein, G, Frolow, F, Rabinovich, D, Joachimiak, A, Sigler, P.B.
Deposit date:1994-09-12
Release date:2020-10-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Determinants of repressor/operator recognition from the structure of the trp operator binding site.
Nature, 368, 1994
5Y7R
DownloadVisualize
BU of 5y7r by Molmil
Quaternary complex of AsqJ-Fe3+-2OG-cyclopeptin
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, Iron/alpha-ketoglutarate-dependent dioxygenase asqJ, ...
Authors:Liao, H.J, Lin, T.S.
Deposit date:2017-08-17
Release date:2018-01-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Insights into the Desaturation of Cyclopeptin and its C3 Epimer Catalyzed by a non-Heme Iron Enzyme: Structural Characterization and Mechanism Elucidation.
Angew. Chem. Int. Ed. Engl., 57, 2018
5ZLZ
DownloadVisualize
BU of 5zlz by Molmil
Structure of tPA and PAI-1
Descriptor: GLYCEROL, Plasminogen activator inhibitor 1, Tissue-type plasminogen activator
Authors:Min, L, Huang, M.
Deposit date:2018-03-31
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.581 Å)
Cite:Development of a PAI-1 trapping agent (PAItrap2) based on inactivated tPA-SPD and the crystal structure of PAItrap2 in complex with PAI-1
To Be Published
8SF2
DownloadVisualize
BU of 8sf2 by Molmil
Crystal structure of the engineered SsoPox variant IG7
Descriptor: Aryldialkylphosphatase, COBALT (II) ION, FE (III) ION, ...
Authors:Jacquet, P, Billot, R, Shimon, A, Hoekstra, N, Bergonzi, C, Jenks, A, Daude, D, Elias, M.H.
Deposit date:2023-04-10
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Changes in Active Site Loops Conformation Relates to a Transition from Lactonase to Phosphotriesterase
To Be Published
8SFA
DownloadVisualize
BU of 8sfa by Molmil
Crystal structure of the engineered SsoPox variant IIIC1
Descriptor: Aryldialkylphosphatase, COBALT (II) ION, FE (III) ION
Authors:Jacquet, P, Billot, R, Shimon, A, Hoekstra, N, Bergonzi, C, Jenks, A, Daude, D, Elias, M.H.
Deposit date:2023-04-10
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Changes in Active Site Loops Conformation Relates to a Transition from Lactonase to Phosphotriesterase
To Be Published
5WTZ
DownloadVisualize
BU of 5wtz by Molmil
Crystal structure of C. perfringens iota-like enterotoxin CPILE-a with NAD+
Descriptor: Binary enterotoxin of Clostridium perfringens component a, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Toniti, W, Yoshida, T, Tsurumura, T, Irikura, D, Tsuge, H.
Deposit date:2016-12-15
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Crystal structure and structure-based mutagenesis of actin-specific ADP-ribosylating toxin CPILE-a as novel enterotoxin
PLoS ONE, 12, 2017
5BYI
DownloadVisualize
BU of 5byi by Molmil
Human carbonic anhydrase II with an azobenzene inhibitor (1d)
Descriptor: 4-(HYDROXYMERCURY)BENZOIC ACID, 4-[(E)-(4-aminophenyl)diazenyl]benzenesulfonamide, Carbonic anhydrase 2, ...
Authors:Groll, M, Broichhagen, J.
Deposit date:2015-06-10
Release date:2015-08-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Azobenzene-based inhibitors of human carbonic anhydrase II.
Beilstein J Org Chem, 11, 2015
6CZW
DownloadVisualize
BU of 6czw by Molmil
Crystal structure of PT1940 bound to HIF2a-B*:ARNT-B* complex
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, {2-bromo-3-(3-chloro-5-fluorophenoxy)-6-[(difluoromethyl)sulfonyl]phenyl}methanol
Authors:Du, X.
Deposit date:2018-04-09
Release date:2018-10-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of PT1940 bound to HIF2a-B*:ARNT-B* complex
To Be Published
5ZVS
DownloadVisualize
BU of 5zvs by Molmil
Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly
Descriptor: Putative core protein NTPase/VP5, VP2, VP3
Authors:Liu, H, Fang, Q, Cheng, L.
Deposit date:2018-05-12
Release date:2018-07-04
Last modified:2018-07-25
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6D0B
DownloadVisualize
BU of 6d0b by Molmil
Crystal structure of PT1614 bound to HIF2a-B*:ARNT-B* complex
Descriptor: Aryl hydrocarbon receptor nuclear translocator, Endothelial PAS domain-containing protein 1, N-(3-chloro-5-fluorophenyl)-2-nitro-4-[(trifluoromethyl)sulfonyl]aniline
Authors:Du, X.
Deposit date:2018-04-10
Release date:2018-10-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of PT1614 bound to HIF2a-B*:ARNT-B* complex
To Be Published

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon