Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6VU4
DownloadVisualize
BU of 6vu4 by Molmil
Structure of a beta-hairpin peptide mimic derived from Abeta 14-36
Descriptor: Beta-hairpin Amyloid-beta precursor peptide mimic, CHLORIDE ION, IODIDE ION
Authors:Wierzbicki, M, Kreutzer, A, Samdin, T, Nowick, J.S.
Deposit date:2020-02-14
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.077 Å)
Cite:Effects of N-Terminal Residues on the Assembly of Constrained beta-Hairpin Peptides Derived from A beta.
J.Am.Chem.Soc., 142, 2020
8I2F
DownloadVisualize
BU of 8i2f by Molmil
Crystal structure of Bacillus subtilis LytE catalytic domain in complex with IseA
Descriptor: Probable peptidoglycan endopeptidase LytE, Uncharacterized protein YoeB
Authors:Tandukar, S, Kwon, E, Kim, D.Y.
Deposit date:2023-01-14
Release date:2023-04-05
Last modified:2023-05-17
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural insights into the regulation of peptidoglycan DL-endopeptidases by inhibitory protein IseA.
Structure, 31, 2023
5L7H
DownloadVisualize
BU of 5l7h by Molmil
MCR IN COMPLEX WITH ligand
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-methyl-5,8-dioxa-17lambda-thia-4,18-diazatetracyclo[18.2.2.1,.0]pentacosa-1(22),2(6),3,9,11,13(25),20,23-octaene-17,17-dione, Mineralocorticoid receptor, ...
Authors:Xue, Y, Aagaard, A, Backstrom, S, Edman, K.
Deposit date:2016-06-03
Release date:2016-12-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structure-Based Drug Design of Mineralocorticoid Receptor Antagonists to Explore Oxosteroid Receptor Selectivity.
ChemMedChem, 12, 2017
8INH
DownloadVisualize
BU of 8inh by Molmil
ZjOGT3, flavonoid 7,4'-di-O-glycosyltransferase
Descriptor: Glycosyltransferase, URIDINE-5'-DIPHOSPHATE
Authors:Wang, Z.L, Wang, H.D, Li, F.D, Ye, M.
Deposit date:2023-03-09
Release date:2023-04-19
Last modified:2023-06-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Functional characterization, structural basis, and regio-selectivity control of a promiscuous flavonoid 7,4'-di- O -glycosyltransferase from Ziziphus jujuba var. spinosa.
Chem Sci, 14, 2023
5L7O
DownloadVisualize
BU of 5l7o by Molmil
X-ray structure of Triatoma virus empty capsid
Descriptor: Capsid protein
Authors:Sanchez-Eugenia, R.
Deposit date:2016-06-03
Release date:2016-08-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:X-ray structure of Triatoma virus empty capsid: insights into the mechanism of uncoating and RNA release in dicistroviruses.
J.Gen.Virol., 97, 2016
4ZDE
DownloadVisualize
BU of 4zde by Molmil
Crystal structure of yeast D3,D2-enoyl-CoA isomerase F268A mutant
Descriptor: 3,2-trans-enoyl-CoA isomerase, GLYCEROL, SULFATE ION
Authors:Onwukwe, G.U, Koski, M.K, Wierenga, R.K.
Deposit date:2015-04-17
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of yeast peroxisomal Delta (3), Delta (2)-enoyl-CoA isomerase complexed with acyl-CoA substrate analogues: the importance of hydrogen-bond networks for the reactivity of the catalytic base and the oxyanion hole.
Acta Crystallogr.,Sect.D, 71, 2015
8I1Y
DownloadVisualize
BU of 8i1y by Molmil
The structure of E. coli TrpRS bound with a chemical fragment
Descriptor: 5-ethanoylthiophene-2-carbonitrile, SULFATE ION, TRYPTOPHANYL-5'AMP, ...
Authors:Xiang, M, Zhou, H.
Deposit date:2023-01-13
Release date:2023-04-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening.
Nucleic Acids Res., 51, 2023
8ETZ
DownloadVisualize
BU of 8etz by Molmil
Ancestral PETase 35_442 Mutant E13D
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Saunders, J.W, Frkic, R.L, Jackson, C.J.
Deposit date:2022-10-18
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Ancestral PETase 35_442 Mutant E13D
To Be Published
8EU0
DownloadVisualize
BU of 8eu0 by Molmil
Ancestral PETase 35_442 Mutant E27Q
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Polyethylene terephthalate hydrolase, ...
Authors:Saunders, J.W, Frkic, R.L, Jackson, C.J.
Deposit date:2022-10-18
Release date:2023-11-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Ancestral PETase 35_442 Mutant E27Q
To Be Published
8I2D
DownloadVisualize
BU of 8i2d by Molmil
Crystal structure of Bacillus subtilis LytE
Descriptor: Probable peptidoglycan endopeptidase LytE
Authors:Tandukar, S, Kwon, E, Kim, D.Y.
Deposit date:2023-01-14
Release date:2023-04-19
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Structural insights into the regulation of peptidoglycan DL-endopeptidases by inhibitory protein IseA.
Structure, 31, 2023
6VVG
DownloadVisualize
BU of 6vvg by Molmil
Structure of the Cydia pomonella Granulovirus kinase, PK-1
Descriptor: ADENOSINE MONOPHOSPHATE, Arginine kinase
Authors:Oliver, M.R, Horne, C.R, Keown, J.R, Murphy, J.M, Metcalf, P.
Deposit date:2020-02-17
Release date:2021-02-03
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Granulovirus PK-1 kinase activity relies on a side-to-side dimerization mode centered on the regulatory alpha C helix.
Nat Commun, 12, 2021
5KLT
DownloadVisualize
BU of 5klt by Molmil
Prototypical P4[M]cNLS
Descriptor: Importin subunit alpha-1, Prototypical P4[M]cNLS
Authors:Smith, K.M, Forwood, J.K.
Deposit date:2016-06-25
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Contribution of the residue at position 4 within classical nuclear localization signals to modulating interaction with importins and nuclear targeting.
Biochim Biophys Acta Mol Cell Res, 1865, 2018
4ZH0
DownloadVisualize
BU of 4zh0 by Molmil
Structure of Helicobacter pylori adhesin BabA determined by SeMet SAD
Descriptor: Outer membrane protein-adhesin
Authors:Howard, T.D, Hage, N, Phillips, C, Brassington, C.A, Debreczeni, J, Overman, R, Gellert, P, Stolnik, S, Winkler, G.S, Falcone, F.H.
Deposit date:2015-04-24
Release date:2015-08-19
Last modified:2015-12-09
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural basis of Lewis(b) antigen binding by the Helicobacter pylori adhesin BabA.
Sci Adv, 1, 2015
8I27
DownloadVisualize
BU of 8i27 by Molmil
E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface
Descriptor: 1,2-ETHANEDIOL, 4-methoxybenzenecarbonitrile, SULFATE ION, ...
Authors:Xiang, M, Zhou, H.
Deposit date:2023-01-14
Release date:2023-04-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening.
Nucleic Acids Res., 51, 2023
4ZH5
DownloadVisualize
BU of 4zh5 by Molmil
Crystal structure of Endoglucanase from Perinereis brevicirris with Cellobiose
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Fewings, R.S, Swiderska, A, Sanchez-Weatherby, J, Sorensen, T.-M, Schnorr, K.M, Kneale, G.G, McGeehan, J.E.
Deposit date:2015-04-24
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Biophysical and structural characterisation of the endoglucanase from Perinereis brevicirris
To Be Published
5L8O
DownloadVisualize
BU of 5l8o by Molmil
crystal structure of human FABP6 in complex with cholate
Descriptor: CHOLIC ACID, DI(HYDROXYETHYL)ETHER, Gastrotropin
Authors:Hendrick, A, Mueller, I, Leonard, P.M, Davenport, R, Mitchell, P.
Deposit date:2016-06-08
Release date:2016-08-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Identification and Investigation of Novel Binding Fragments in the Fatty Acid Binding Protein 6 (FABP6).
J.Med.Chem., 59, 2016
5L8W
DownloadVisualize
BU of 5l8w by Molmil
Structure of USP12-UB-PRG/UAF1
Descriptor: GLYCEROL, Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 12, ...
Authors:Dharadhar, S, Sixma, T.
Deposit date:2016-06-08
Release date:2016-09-28
Last modified:2016-11-30
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:A conserved two-step binding for the UAF1 regulator to the USP12 deubiquitinating enzyme.
J.Struct.Biol., 196, 2016
8I2A
DownloadVisualize
BU of 8i2a by Molmil
E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface
Descriptor: 1,2-ETHANEDIOL, 5-METHOXYBENZIMIDAZOLE, SULFATE ION, ...
Authors:Xiang, M, Zhou, H.
Deposit date:2023-01-14
Release date:2023-04-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening.
Nucleic Acids Res., 51, 2023
4ZET
DownloadVisualize
BU of 4zet by Molmil
Blood dendritic cell antigen 2 (BDCA-2) complexed with GalGlcNAcMan
Descriptor: C-type lectin domain family 4 member C, CALCIUM ION, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose
Authors:Jegouzo, S.A.F, Feinberg, H, Dungarwalla, T, Drickamer, K, Weis, W.I, Taylor, M.E.
Deposit date:2015-04-20
Release date:2015-05-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A Novel Mechanism for Binding of Galactose-terminated Glycans by the C-type Carbohydrate Recognition Domain in Blood Dendritic Cell Antigen 2.
J.Biol.Chem., 290, 2015
8ETX
DownloadVisualize
BU of 8etx by Molmil
Ancestral PETase 55_547
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Polyethylene terephthalate hydrolase, ...
Authors:Saunders, J.W, Frkic, R.L, Jackson, C.J.
Deposit date:2022-10-18
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Ancestral PETase 55_547
To Be Published
6VZB
DownloadVisualize
BU of 6vzb by Molmil
Crystal structure of cytochrome P450 NasF5053 S284A-V288A mutant variant from Streptomyces sp. NRRL F-5053 in the cyclo-L-Trp-L-Pro-bound state
Descriptor: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
Authors:Luo, Z, Jia, X, Sun, C, Qu, X, Kobe, B.
Deposit date:2020-02-28
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Molecular basis of regio- and stereo-specificity in biosynthesis of bacterial heterodimeric diketopiperazines.
Nat Commun, 11, 2020
8I1W
DownloadVisualize
BU of 8i1w by Molmil
The asymmetric structure of homodimeric E. coli TrpRS bound with tryptophanyl adenylate at one of its two active pockets
Descriptor: SULFATE ION, TRYPTOPHANYL-5'AMP, Tryptophan--tRNA ligase
Authors:Xiang, M, Zhou, H.
Deposit date:2023-01-13
Release date:2023-04-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening.
Nucleic Acids Res., 51, 2023
8I1Z
DownloadVisualize
BU of 8i1z by Molmil
E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment
Descriptor: 1-(2,3-dihydro-1-benzofuran-5-yl)ethanone, SULFATE ION, TRYPTOPHANYL-5'AMP, ...
Authors:Xiang, M, Zhou, H.
Deposit date:2023-01-13
Release date:2023-04-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening.
Nucleic Acids Res., 51, 2023
8I2C
DownloadVisualize
BU of 8i2c by Molmil
E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface
Descriptor: 1,2-ETHANEDIOL, 4-methoxyaniline, SULFATE ION, ...
Authors:Xiang, M, Zhou, H.
Deposit date:2023-01-14
Release date:2023-04-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening.
Nucleic Acids Res., 51, 2023
6VHZ
DownloadVisualize
BU of 6vhz by Molmil
Klebsiella oxytoca NpsA N-terminal subdomain in complex with anthranilyl-AMSN
Descriptor: 5'-{[(benzenecarbonyl)sulfamoyl]amino}-5'-deoxyadenosine, BROMIDE ION, CHLORIDE ION, ...
Authors:Kreitler, D.F, Gulick, A.M.
Deposit date:2020-01-10
Release date:2020-06-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Biosynthesis, Mechanism of Action, and Inhibition of the Enterotoxin Tilimycin Produced by the Opportunistic PathogenKlebsiella oxytoca.
Acs Infect Dis., 6, 2020

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon