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5N35	Gadolinium phased PBP2 (SSO6202) at 2.2 Ang Descriptor: GADOLINIUM ATOM, GLYCEROL, NITRATE ION, ... Authors: Yan, J, Beattie, T.R, Rojas, A.L, Schermerhorn, K, Gristwood, T, Trinidad, J.C, Albers, S.V, Roversi, P, Gardner, A.F, Abrescia, N.G.A, Bell, S.D. Deposit date: 2017-02-08 Release date: 2017-05-17 Last modified: 2017-12-06 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Identification and characterization of a heterotrimeric archaeal DNA polymerase holoenzyme. Nat Commun, 8, 2017
6BR7	Beryllium fluorinated receiver domain of BfmR from Acinetobacter baumannii Descriptor: BERYLLIUM TRIFLUORIDE ION, BfmR, MAGNESIUM ION Authors: Milton, M.E, Cavanagh, J. Deposit date: 2017-11-30 Release date: 2018-02-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.86 Å) Cite: The Structure of the Biofilm-controlling Response Regulator BfmR from Acinetobacter baumannii Reveals Details of Its DNA-binding Mechanism. J. Mol. Biol., 430, 2018
8OE3	Crystal structure of the non-canonical quadruplex d(GCATGCT) before soaking Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3') Authors: Lambert, M.C, Hall, J.P. Deposit date: 2023-03-10 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Oxidative damage induce copper(II)-DNA binding To Be Published
5NR5	NMR structure and 1H, 13C and 15N signal assignments for Dictyostelium discoideum MATA protein Descriptor: MatA protein Authors: Neuhaus, D, Hedgethorne, K, Yang, J.-C. Deposit date: 2017-04-22 Release date: 2017-09-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Homeodomain-like DNA binding proteins control the haploid-to-diploid transition in Dictyostelium. Sci Adv, 3, 2017
7WJ0	Solution structure of N-terminal domain (nMazE6) of mycobacterial antitoxin MazE6 from MazEF6 TA system Descriptor: Antitoxin MazE6 Authors: Kumari, K, Sarma, S.P. Deposit date: 2022-01-05 Release date: 2022-10-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural and mutational analysis of MazE6-operator DNA complex provide insights into autoregulation of toxin-antitoxin systems. Commun Biol, 5, 2022
1B43	FEN-1 FROM P. FURIOSUS Descriptor: PROTEIN (FEN-1) Authors: Hosfield, D.J, Mol, C.D, Shen, B, Tainer, J.A. Deposit date: 1999-01-05 Release date: 2000-01-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity. Cell(Cambridge,Mass.), 95, 1998
8W35	Aca2 from Pectobacterium phage ZF40 bound to RNA Descriptor: Anti-CRISPR associated (Aca) protein, Aca2, IR2 and IR-RBS RNA Authors: Wilkinson, M.E, Birkholz, N, Kimanius, D, Fineran, P.C. Deposit date: 2024-02-21 Release date: 2024-07-24 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.61 Å) Cite: Phage anti-CRISPR control by an RNA- and DNA-binding helix-turn-helix protein. Nature, 631, 2024
1SD7	Crystal Structure of a SeMet derivative of MecI at 2.65 A Descriptor: Methicillin resistance regulatory protein mecI Authors: Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L. Deposit date: 2004-02-13 Release date: 2004-02-24 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol., 187, 2005
5ZJ5	Guanine-specific ADP-ribosyltransferase with NADH and GDP Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ADP-ribosyltransferase, GUANOSINE-5'-DIPHOSPHATE Authors: Yoshida, T, Tsuge, H. Deposit date: 2018-03-19 Release date: 2018-08-08 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.568112 Å) Cite: Substrate N2atom recognition mechanism in pierisin family DNA-targeting, guanine-specific ADP-ribosyltransferase ScARP. J. Biol. Chem., 293, 2018
2Q7T	Crystal Structure of the F plasmid TraI Relaxase Domain with the Scissile Thymidine Base Descriptor: MAGNESIUM ION, Protein traI, THYMIDINE-5'-PHOSPHATE Authors: Lujan, S.A, Redinbo, M.R. Deposit date: 2007-06-07 Release date: 2008-05-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Disrupting antibiotic resistance propagation by inhibiting the conjugative DNA relaxase. Proc.Natl.Acad.Sci.Usa, 104, 2007
2FJW	d(CTTGAATGCATTCAAG) in complex with MMLV RT catalytic fragment Descriptor: 5'-D(*CP*TP*TP*GP*AP*AP*TP*G)-3', 5'-D(P*CP*AP*TP*TP*CP*AP*AP*G)-3', Reverse transcriptase Authors: Goodwin, K.D, Georgiadis, M.M. Deposit date: 2006-01-03 Release date: 2006-06-27 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.95 Å) Cite: A High-Throughput, High-Resolution Strategy for the Study of Site-Selective DNA Binding Agents: Analysis of a "Highly Twisted" Benzimidazole-Diamidine. J.Am.Chem.Soc., 128, 2006
4OFE	Structural basis for thymine glycosylase activity on T:O6-methylG mismatch by methyl-CpG binding domain protein 4: Implications for roles of Arg468 in mismatch recognition and catalysis Descriptor: 12-mer DNA(G), 12-mer DNA(T), MAGNESIUM ION, ... Authors: Ouzon-Shubeita, H, Lin, Y.-L, Lee, S. Deposit date: 2014-01-14 Release date: 2015-04-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structure of R468K/D560N MBD4 bound to G:T mispair DNA To be Published
5HML	Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions Descriptor: 1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ... Authors: Flemming, C.S, Feng, M, Sedelnikova, S.E, Zhang, J, Rafferty, J.B, Sayers, J.R, Artymiuk, P.J. Deposit date: 2016-01-16 Release date: 2016-06-01 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.482 Å) Cite: Direct observation of DNA threading in flap endonuclease complexes. Nat.Struct.Mol.Biol., 23, 2016
3H0D	Crystal structure of CtsR in complex with a 26bp DNA duplex Descriptor: CtsR, DNA (26-MER), PHOSPHATE ION Authors: Clausen, T, Fuhrmann, J. Deposit date: 2009-04-09 Release date: 2009-06-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: McsB is a protein arginine kinase that phosphorylates and inhibits the heat-shock regulator CtsR Science, 324, 2009
5HMM	Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Exodeoxyribonuclease, ... Authors: Flemming, C.S, Sedelnikova, S.E, Rafferty, J.B, Sayers, J.R, Artymiuk, P.J. Deposit date: 2016-01-16 Release date: 2016-06-01 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Direct observation of DNA threading in flap endonuclease complexes. Nat.Struct.Mol.Biol., 23, 2016
5XFP	Binary complex of PHF1 and a double stranded DNA Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'), PHD finger protein 1, ... Authors: Wang, Z, Li, H. Deposit date: 2017-04-11 Release date: 2017-09-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Polycomb-like proteins link the PRC2 complex to CpG islands Nature, 549, 2017
6UVK	OXA-48 bound by inhibitor CDD-97 Descriptor: 1,2-ETHANEDIOL, 1-{4-[4-(2-ethoxyphenyl)piperazin-1-yl]-1,3,5-triazin-2-yl}piperidine-4-carboxylic acid, Beta-lactamase, ... Authors: Taylor, D.M, Hu, L, Prasad, B.V.V, Sankaran, B, Palzkill, T.G. Deposit date: 2019-11-02 Release date: 2020-05-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Identifying Oxacillinase-48 Carbapenemase Inhibitors Using DNA-Encoded Chemical Libraries. Acs Infect Dis., 6, 2020
3HA8	THE COMPLEX STRUCTURE OF THE MAP KINASE P38/Compound 14b Descriptor: Mitogen-activated protein kinase 14, N~2~-{4-[6-(3,4-dihydroquinolin-1(2H)-ylcarbonyl)-1H-benzimidazol-1-yl]-6-ethoxy-1,3,5-triazin-2-yl}-3-(2,2-dimethyl-4H-1,3-benzodioxin-6-yl)-N-methyl-L-alaninamide Authors: Zhao, B, Clark, M.A. Deposit date: 2009-05-01 Release date: 2009-08-04 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Design, synthesis and selection of DNA-encoded small-molecule libraries. Nat.Chem.Biol., 5, 2009
6LUI	Crystal structure of the SAMD1 WH domain and DNA complex Descriptor: Atherin, DNA (5'-D(*AP*CP*CP*TP*GP*CP*GP*CP*AP*CP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*GP*TP*GP*CP*GP*CP*AP*GP*GP*T)-3') Authors: Zhou, Y, Cao, Y, Wang, Z. Deposit date: 2020-01-29 Release date: 2021-02-03 Last modified: 2021-07-07 Method: X-RAY DIFFRACTION (1.781 Å) Cite: The SAM domain-containing protein 1 (SAMD1) acts as a repressive chromatin regulator at unmethylated CpG islands. Sci Adv, 7, 2021
2MJG	Solution Structure of C-terminal AbrB Descriptor: Transition state regulatory protein AbrB Authors: Olson, A.L, Tucker, A.T, Thompson, R.J, Cavanagh, J. Deposit date: 2014-01-08 Release date: 2014-11-26 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure and DNA-binding traits of the transition state regulator AbrB. Structure, 22, 2014
8FZT	SpCas9 with dual-guide RNA and target DNA Descriptor: CRISPR-associated endonuclease Cas9/Csn1, CrE2, E2-NTS, ... Authors: Korolev, S, Gagnon, K. Deposit date: 2023-01-30 Release date: 2023-05-31 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: SpCas9 with dual-guide RNA and target DNA To Be Published
4FHE	Spore photoproduct lyase C140A mutant Descriptor: 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ... Authors: Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. Deposit date: 2012-06-06 Release date: 2012-07-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012
3FD2	Crystal structure of mMsoI/DNA complex with calcium Descriptor: 5'-D(*CP*GP*GP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*CP*TP*GP*C)-3', 5'-D(*GP*CP*AP*GP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*CP*CP*G)-3', CALCIUM ION, ... Authors: Li, H, Monnat, R.J. Deposit date: 2008-11-24 Release date: 2009-06-30 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Generation of single-chain LAGLIDADG homing endonucleases from native homodimeric precursor proteins. Nucleic Acids Res., 37, 2009
4FHF	Spore photoproduct lyase C140A mutant with dinucleoside spore photoproduct Descriptor: 1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione, IRON/SULFUR CLUSTER, PYROPHOSPHATE 2-, ... Authors: Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. Deposit date: 2012-06-06 Release date: 2012-07-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012
4FHG	Spore photoproduct lyase C140S mutant Descriptor: 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ... Authors: Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I. Deposit date: 2012-06-06 Release date: 2012-07-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme. Nucleic Acids Res., 40, 2012

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