PDB: 52994 resultsInfo pagesStatus searchChemie searchBIRD

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3SDB	Crystal structure of C176A mutant of glutamine-dependent NAD+ synthetase from M. tuberculosis in apo form Descriptor: Glutamine-dependent NAD(+) synthetase Authors: Chuenchor, W, Gerratana, B. Deposit date: 2011-06-09 Release date: 2012-04-11 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.0017 Å) Cite: Regulation of the intersubunit ammonia tunnel in Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase. Biochem.J., 443, 2012
3SEZ	Crystal structure of C176A mutant of glutamine-dependent NAD+ synthetase from M. tuberculosis in complex with ATP and NaAD+ Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Glutamine-dependent NAD(+) synthetase, NICOTINIC ACID ADENINE DINUCLEOTIDE Authors: Chuenchor, W, Gerratana, B. Deposit date: 2011-06-11 Release date: 2012-04-11 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.6529 Å) Cite: Regulation of the intersubunit ammonia tunnel in Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase. Biochem.J., 443, 2012
2EQA	Crystal Structure of the hypothetical Sua5 protein from Sulfolobus tokodaii Descriptor: ADENOSINE MONOPHOSPHATE, Hypothetical protein ST1526, MAGNESIUM ION Authors: Agari, Y, Shinkai, A, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-30 Release date: 2008-01-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7 Proteins, 70, 2008
6OKV	PilT4 from Geobacter metallireducens bound to AMP-PNP: C2ccocco conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: McCallum, M, Howell, P.L. Deposit date: 2019-04-15 Release date: 2019-11-20 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (4.007 Å) Cite: Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun, 10, 2019
1U54	Crystal Structures of the Phosphorylated and Unphosphorylated Kinase Domains of the CDC42-associated Tyrosine Kinase ACK1 bound to AMP-PCP Descriptor: Activated CDC42 kinase 1, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER Authors: Lougheed, J.C, Chen, R.H, Mak, P, Stout, T.J. Deposit date: 2004-07-26 Release date: 2004-08-31 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal Structures of the Phosphorylated and Unphosphorylated Kinase Domains of the Cdc42-associated Tyrosine Kinase ACK1. J.Biol.Chem., 279, 2004
3JVV	Crystal Structure of P. aeruginosa PilT with bound AMP-PCP Descriptor: CITRIC ACID, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ... Authors: Misic, A.M, Satyshur, K.A, Forest, K.T. Deposit date: 2009-09-17 Release date: 2010-06-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: P. aeruginosa PilT structures with and without nucleotide reveal a dynamic type IV pilus retraction motor. J.Mol.Biol., 400, 2010
4RV7	Characterization of an essential diadenylate cyclase Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Diadenylate cyclase, HEXANE-1,6-DIOL, ... Authors: Dickmanns, A, Neumann, P, Ficner, R. Deposit date: 2014-11-25 Release date: 2015-01-28 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and Biochemical Analysis of the Essential Diadenylate Cyclase CdaA from Listeria monocytogenes. J.Biol.Chem., 290, 2015
6E97	Crystal structure of the aryl acid adenylating enzyme FscC from Fuscachelin NRPS in complex with DHB-adenylate Descriptor: 2,3-dihydroxybenzoate-AMP ligase, 5'-O-[(S)-[(2,3-dihydroxybenzene-1-carbonyl)oxy](hydroxy)phosphoryl]adenosine, GLYCEROL, ... Authors: Bruner, S.D, Zagulyaeva, A.A. Deposit date: 2018-07-31 Release date: 2019-08-21 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Implication of MbtH-like proteins in crystallization of the independent NRPS A domains. Crystal structure of FscC: supporting rationale for revised mechanism of freestanding aryl acid adenylating enzymes To Be Published
8DZG	Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, BfpD, MAGNESIUM ION, ... Authors: Nayak, A.R, Zhao, J, Donnenberg, M.S, Samso, M. Deposit date: 2022-08-07 Release date: 2022-10-26 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM Structure of the Type IV Pilus Extension ATPase from Enteropathogenic Escherichia coli. Mbio, 13, 2022
2DZC	Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii, Mutation R48A Descriptor: biotin--[acetyl-CoA-carboxylase] ligase Authors: Bagautdinov, B, Taketa, M, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-09-27 Release date: 2007-03-27 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Protein biotinylation visualized by a complex structure of biotin protein ligase with a substrate J.Biol.Chem., 283, 2008
1V8L	Structure Analysis of the ADP-ribose pyrophosphatase complexed with ADP-ribose Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-10 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8R	Crystal structure analysis of the ADP-ribose pyrophosphatase complexed with ADP-ribose and Zn Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, ZINC ION Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-14 Release date: 2005-02-22 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8Y	Crystal structure analysis of the ADP-ribose pyrophosphatase of E86Q mutant, complexed with ADP-ribose and Zn Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, ZINC ION Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-15 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8N	Crystal structure analysis of the ADP-ribose pyrophosphatase complexed with Zn Descriptor: ADP-ribose pyrophosphatase, ZINC ION Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-12 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8V	Crystal structure analysis of the ADP-ribose pyrophosphatase of E86Q mutant, complexed with ADP-ribose and Mg Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, MAGNESIUM ION Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-15 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8T	Crystal Structure analysis of the ADP-ribose pyrophosphatase complexed with ribose-5'-phosphate and Zn Descriptor: ADP-ribose pyrophosphatase, RIBOSE-5-PHOSPHATE, ZINC ION Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-14 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8U	Crystal structure analysis of the ADP-ribose pyrophosphatase of E82Q mutant with SO4 and Mg Descriptor: ADP-ribose pyrophosphatase, MAGNESIUM ION, SULFATE ION Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-15 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8M	Crystal structure analysis of ADP-ribose pyrophosphatase complexed with ADP-ribose and Gd Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, ADP-ribose pyrophosphatase, GADOLINIUM ATOM Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-12 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8I	Crystal Structure Analysis of the ADP-ribose pyrophosphatase Descriptor: ADP-ribose pyrophosphatase Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-09 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
1V8W	Crystal structure analysis of the ADP-ribose pyrophosphatase of E82Q mutant, complexed with SO4 and Zn Descriptor: ADP-ribose pyrophosphatase, SULFATE ION, ZINC ION Authors: Yoshiba, S, Ooga, T, Nakagawa, N, Shibata, T, Inoue, Y, Yokoyama, S, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-01-15 Release date: 2004-10-19 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal J.Biol.Chem., 279, 2004
5BSW	Crystal structure of 4-coumarate:CoA ligase delta-V341 mutant complexed with feruloyl adenylate Descriptor: 4-coumarate--CoA ligase 2, 5'-O-[(R)-hydroxy{[(2E)-3-(5-methoxy-4-oxocyclohexa-1,5-dien-1-yl)prop-2-enoyl]oxy}phosphoryl]adenosine Authors: Li, Z, Nair, S.K. Deposit date: 2015-06-02 Release date: 2016-05-11 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural Basis for Specificity and Flexibility in a Plant 4-Coumarate:CoA Ligase. Structure, 23, 2015
1AKE	STRUCTURE OF THE COMPLEX BETWEEN ADENYLATE KINASE FROM ESCHERICHIA COLI AND THE INHIBITOR AP5A REFINED AT 1.9 ANGSTROMS RESOLUTION: A MODEL FOR A CATALYTIC TRANSITION STATE Descriptor: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE Authors: Mueller, C.W, Schulz, G.E. Deposit date: 1991-11-08 Release date: 1994-01-31 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state. J.Mol.Biol., 224, 1992
1V25	Crystal structure of tt0168 from Thermus thermophilus HB8 Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, long-chain-fatty-acid-CoA synthetase Authors: Hisanaga, Y, Ago, H, Nakatsu, T, Hamada, K, Ida, K, Kanda, H, Yamamoto, M, Hori, T, Arii, Y, Sugahara, M, Kuramitsu, S, Yokoyama, S, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-10-07 Release date: 2004-07-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer J.Biol.Chem., 279, 2004
4MX2	Crystal Structure of adenylosuccinate lyase from Leishmania donovani Descriptor: ADENOSINE MONOPHOSPHATE, Adenylosuccinate lyase, GLYCEROL, ... Authors: Wernimont, A.K, Loppnau, P, Dong, A, Krojer, T, Bradley, A, Bushell, S, von Delft, F, Robinson, D, Gilbert, I, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Hui, R, Mottaghi, K, Structural Genomics Consortium (SGC) Deposit date: 2013-09-25 Release date: 2014-04-16 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structure of adenylosuccinate lyase from Leishmania donovani To be Published
1ULT	Crystal structure of tt0168 from Thermus thermophilus HB8 Descriptor: CITRIC ACID, long chain fatty acid-CoA ligase Authors: Hisanaga, Y, Ago, H, Nakatsu, T, Hamada, K, Ida, K, Kanda, H, Yamamoto, M, Hori, T, Arii, Y, Sugahara, M, Kuramitsu, S, Yokoyama, S, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-09-16 Release date: 2004-07-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structural basis of the substrate specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer J.Biol.Chem., 279, 2004

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