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4BBV
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BU of 4bbv by Molmil
The PB0 Photocycle Intermediate of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A.
Deposit date:2012-09-28
Release date:2012-11-14
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography.
Proc.Natl.Acad.Sci.USA, 109, 2012
1KOU
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BU of 1kou by Molmil
Crystal Structure of the Photoactive Yellow Protein Reconstituted with Caffeic Acid at 1.16 A Resolution
Descriptor: CAFFEIC ACID, N-BUTANE, PHOTOACTIVE YELLOW PROTEIN
Authors:van Aalten, D.M.F, Crielaard, W, Hellingwerf, K.J, Joshua-Tor, L.
Deposit date:2001-12-22
Release date:2002-04-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Structure of the photoactive yellow protein reconstituted with caffeic acid at 1.16 A resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1LT0
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BU of 1lt0 by Molmil
Crystal structure of the CN-bound BjFixL heme domain
Descriptor: CYANIDE ION, PROTOPORPHYRIN IX CONTAINING FE, Sensor protein FixL
Authors:Hao, B, Isaza, C, Arndt, J, Soltis, M, Chan, M.K.
Deposit date:2002-05-20
Release date:2002-11-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-based mechanism of O2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum
Biochemistry, 41, 2002
1LSW
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BU of 1lsw by Molmil
Crystal structure of the ferrous BjFixL heme domain
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Sensor protein FixL
Authors:Hao, B, Isaza, C, Arndt, J, Soltis, M, Chan, M.K.
Deposit date:2002-05-20
Release date:2002-11-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-based mechanism of O2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum
Biochemistry, 41, 2002
1LSV
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BU of 1lsv by Molmil
Crystal structure of the CO-bound BjFixL heme domain
Descriptor: CARBON MONOXIDE, PROTOPORPHYRIN IX CONTAINING FE, Sensor protein FixL
Authors:Hao, B, Isaza, C, Arndt, J, Soltis, M, Chan, M.K.
Deposit date:2002-05-19
Release date:2002-11-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-based mechanism of O2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum
Biochemistry, 41, 2002
1LSX
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BU of 1lsx by Molmil
Crystal structure of the methylimidazole-bound BjFixL heme domain
Descriptor: 1-METHYLIMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, Sensor protein FixL
Authors:Hao, B, Isaza, C, Arndt, J, Soltis, M, Chan, M.K.
Deposit date:2002-05-20
Release date:2002-11-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based mechanism of O2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum
Biochemistry, 41, 2002
4EW7
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BU of 4ew7 by Molmil
The crystal structure of conjugative transfer PAS_like domain from Salmonella enterica subsp. enterica serovar Typhimurium
Descriptor: ACETIC ACID, CHLORIDE ION, Conjugative transfer: regulation, ...
Authors:Wu, R, Jedrzejczak, R.P, Brown, R.N, Cort, J.R, Heffron, F, Nakayasu, E.S, Adkins, J.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Deposit date:2012-04-26
Release date:2012-09-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:The crystal structure of conjugative transfer PAS_like domain from Salmonella enterica subsp. enterica serovar Typhimurium
To be Published
1NWZ
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BU of 1nwz by Molmil
PYP Ultra-high resolution structure of a Bacterial Photoreceptor
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Getzoff, E.D, Gutwin, K.N, Genick, U.K.
Deposit date:2003-02-07
Release date:2003-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.82 Å)
Cite:Anticipatory active-site motions and chromophore distortions prime photoreceptor PYP for light activation
Nat.Struct.Biol., 10, 2003
2VV7
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BU of 2vv7 by Molmil
BJFIXLH IN UNLIGANDED FERROUS FORM
Descriptor: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL, ...
Authors:Ayers, R.A, Moffat, K.
Deposit date:2008-06-04
Release date:2008-11-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains.
Biochemistry, 47, 2008
2VV6
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BU of 2vv6 by Molmil
BJFIXLH IN FERRIC FORM
Descriptor: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, SENSOR PROTEIN FIXL, ...
Authors:Ayers, R.A, Moffat, K.
Deposit date:2008-06-04
Release date:2008-11-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains.
Biochemistry, 47, 2008
4I3J
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BU of 4i3j by Molmil
Structures of PR1 intermediate of photoactive yellow protein E46Q mutant from time-resolved laue crystallography collected AT 14ID APS
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Jung, Y.O, Lee, J.H, Kim, J, Schmidt, M, Vukica, S, Moffat, K, Ihee, H.
Deposit date:2012-11-26
Release date:2013-03-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
NAT.CHEM., 5, 2013
4I39
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BU of 4i39 by Molmil
Structures of ICT and PR1 intermediates from time-resolved laue crystallography collected at 14ID-B, APS
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Jung, Y.O, Lee, J.H, Kim, J, Schmidt, M, Vukica, S, Moffat, K, Ihee, H.
Deposit date:2012-11-26
Release date:2013-03-20
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
NAT.CHEM., 5, 2013
4I3A
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BU of 4i3a by Molmil
Structures of PR1 and PR2 intermediates from time-resolved laue crystallography collected at 14ID-B, APS
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Jung, Y.O, Lee, J.H, Kim, J, Schmidt, M, Vukica, S, Moffat, K, Ihee, H.
Deposit date:2012-11-26
Release date:2013-03-20
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
NAT.CHEM., 5, 2013
4HY8
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BU of 4hy8 by Molmil
Structures of PR1 and PR2 intermediates from time-resolved laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Jung, Y.O, Lee, J.H, Kim, J, Schmidt, M, Vukica, S, Wulff, M, Moffat, K.
Deposit date:2012-11-13
Release date:2013-03-20
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
NAT.CHEM., 5, 2013
4I38
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BU of 4i38 by Molmil
Structures of IT intermediates from time-resolved laue crystallography collected at 14ID-B, APS
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Jung, Y.O, Lee, J.H, Kim, J, Schmidt, M, Vukica, S, Moffat, K, Ihee, H.
Deposit date:2012-11-26
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
NAT.CHEM., 5, 2013
4I3I
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BU of 4i3i by Molmil
Structures of IT intermediate of photoactive yellow protein E46Q mutant from time-resolved laue crystallography collected at 14ID APS
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Jung, Y.O, Lee, J.H, Kim, J, Schmidt, M, Vukica, S, Moffat, K, Ihee, H.
Deposit date:2012-11-26
Release date:2013-03-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
NAT.CHEM., 5, 2013
8DZU
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BU of 8dzu by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF M100H construct
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:2022-08-08
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
To Be Published
8DZY
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BU of 8dzy by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF I49T construct
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Weaver, J.B, Kirsh, J.M, Boxer, S.G.
Deposit date:2022-08-08
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
To Be Published
8E1L
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BU of 8e1l by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF M100N construct
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:2022-08-10
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
To Be Published
8DZX
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BU of 8dzx by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF M100K construct
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:2022-08-08
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
To Be Published
8E09
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BU of 8e09 by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF M100E construct
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:2022-08-08
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
To Be Published
8E1K
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BU of 8e1k by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF M100Q construct
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:2022-08-10
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
To Be Published
8E03
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BU of 8e03 by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF M100D construct
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:2022-08-08
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
To Be Published
8E02
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BU of 8e02 by Molmil
Crystal structure of photoactive yellow protein (PYP); F96oCNF T103V construct
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:2022-08-08
Release date:2022-08-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy
To Be Published
2ZOH
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BU of 2zoh by Molmil
X-ray Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Yamaguchi, S.
Deposit date:2008-05-20
Release date:2009-03-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009

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PDB entries from 2024-05-01

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