Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7MUB
DownloadVisualize
BU of 7mub by Molmil
KcsA Open gate E71V mutant in Potassium
Descriptor: Fab heavy chain, Fab light chain, POTASSIUM ION, ...
Authors:Rohaim, A, Li, J, Weingarth, M, Roux, B.
Deposit date:2021-05-14
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:A distinct mechanism of C-type inactivation in the Kv-like KcsA mutant E71V.
Nat Commun, 13, 2022
7MK6
DownloadVisualize
BU of 7mk6 by Molmil
KcsA open gate E71V mutant with sodium
Descriptor: Fab heavy chain, Fab light chain, pH-gated potassium channel KcsA
Authors:Rohaim, A, Li, J, Weingarth, M, Roux, B.
Deposit date:2021-04-21
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A distinct mechanism of C-type inactivation in the Kv-like KcsA mutant E71V.
Nat Commun, 13, 2022
7MJT
DownloadVisualize
BU of 7mjt by Molmil
KcsA open gate E71V mutant with Barium
Descriptor: BARIUM ION, Fab heavy chain, Fab light chain, ...
Authors:Rohaim, A, Li, J, Weingarth, M, Roux, B.
Deposit date:2021-04-20
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A distinct mechanism of C-type inactivation in the Kv-like KcsA mutant E71V.
Nat Commun, 13, 2022
6QZ4
DownloadVisualize
BU of 6qz4 by Molmil
Structure of MHETase from Ideonella sakaiensis
Descriptor: CALCIUM ION, Mono(2-hydroxyethyl) terephthalate hydrolase, SULFATE ION
Authors:Allen, M.D, Johnson, C.W, Knott, B.C, Beckham, G.T, McGeehan, J.E.
Deposit date:2019-03-11
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Characterization and engineering of a two-enzyme system for plastics depolymerization.
Proc.Natl.Acad.Sci.USA, 117, 2020
6QOX
DownloadVisualize
BU of 6qox by Molmil
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 27 (Methyl 2-(hydroxymethyl)-6H-thieno[2,3-b]pyrrole-5-carboxylate)
Descriptor: methyl 2-(hydroxymethyl)-6~{H}-thieno[2,3-b]pyrrole-5-carboxylate, tRNA (guanine-N(1)-)-methyltransferase
Authors:Thomas, S.E, Whitehouse, A.J, Coyne, A.G, Abell, C, Mendes, V, Blundell, T.L.
Deposit date:2019-02-12
Release date:2020-02-26
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification.
Nucleic Acids Res., 48, 2020
5LA6
DownloadVisualize
BU of 5la6 by Molmil
Tubulin-pironetin complex
Descriptor: CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Prota, A.E, Setter, J, Waight, A.B, Bargsten, K, Murga, J, Diaz, J.F, Steinmetz, M.O.
Deposit date:2016-06-13
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Pironetin Binds Covalently to alpha Cys316 and Perturbs a Major Loop and Helix of alpha-Tubulin to Inhibit Microtubule Formation.
J.Mol.Biol., 428, 2016
4K5Z
DownloadVisualize
BU of 4k5z by Molmil
Crystal Structure of Human Chymase in Complex with Fragment Inhibitor 6-chloro-2,3-dihydro-1H-isoindol-1-one
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-chloro-2,3-dihydro-1H-isoindol-1-one, Chymase, ...
Authors:Collins, B.K, Padyana, A.K.
Deposit date:2013-04-15
Release date:2013-05-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of Potent, Selective Chymase Inhibitors via Fragment Linking Strategies.
J.Med.Chem., 56, 2013
8B8O
DownloadVisualize
BU of 8b8o by Molmil
Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide
Descriptor: 1,2-ETHANEDIOL, Protein E6, Protein scribble homolog
Authors:Stewart, B.Z, Kvansakul, M.
Deposit date:2022-10-04
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide
To Be Published
1RVT
DownloadVisualize
BU of 1rvt by Molmil
1930 H1 Hemagglutinin in complex with LSTC
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Skehel, J.J, Gamblin, S.J, Haire, L.F, Russell, R.J, Stevens, D.J, Xiao, B, Ha, Y, Vasisht, N, Steinhauer, D.A, Daniels, R.S.
Deposit date:2003-12-15
Release date:2004-03-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure and receptor binding properties of the 1918 influenza hemagglutinin.
Science, 303, 2004
5WA9
DownloadVisualize
BU of 5wa9 by Molmil
Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) H112N mutant nucleoside D-Ala phosphoramidate substrate complex
Descriptor: CHLORIDE ION, Histidine triad nucleotide-binding protein 1, [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-[(2~{R})-1-methoxy-1-oxidanylidene-propan-2-yl]phosphonamidic acid
Authors:Maize, K.M, Finzel, B.C.
Deposit date:2017-06-26
Release date:2017-10-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:A Crystal Structure Based Guide to the Design of Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) Activated ProTides.
Mol. Pharm., 14, 2017
6QWO
DownloadVisualize
BU of 6qwo by Molmil
Zinc-reconstituted ODP from T. maritima
Descriptor: Oxygen-binding diiron protein, ZINC ION
Authors:Muok, A.R, Crane, B.R.
Deposit date:2019-03-05
Release date:2019-06-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2 Å)
Cite:A di-iron protein recruited as an Fe[II] and oxygen sensor for bacterial chemotaxis functions by stabilizing an iron-peroxy species.
Proc.Natl.Acad.Sci.USA, 116, 2019
8BD0
DownloadVisualize
BU of 8bd0 by Molmil
Human Gamma-D crystallin R36S mutant with DTT-Cystein Protein modification
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Human Gamma-D Crystallin R36S
Authors:Yorke, B.A, Hill, J.A.
Deposit date:2022-10-17
Release date:2023-11-01
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:An ultraviolet-driven rescue pathway for oxidative stress to eye lens protein human gamma-D crystallin.
Commun Chem, 7, 2024
6WE4
DownloadVisualize
BU of 6we4 by Molmil
Human PARP14 (ARTD8), catalytic fragment in complex with compound 2
Descriptor: 1,2-ETHANEDIOL, 2-methyl-3,5,6,7-tetrahydro-4H-cyclopenta[4,5]thieno[2,3-d]pyrimidin-4-one, 8-methyl-2-{[(pyridin-4-yl)sulfanyl]methyl}quinazolin-4(3H)-one, ...
Authors:Swinger, K.S, Schenkel, L.B, Kuntz, K.W.
Deposit date:2020-04-01
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A potent and selective PARP14 inhibitor decreases protumor macrophage gene expression and elicits inflammatory responses in tumor explants.
Cell Chem Biol, 28, 2021
1RF1
DownloadVisualize
BU of 1rf1 by Molmil
Crystal Structure of Fragment D of gammaE132A Fibrinogen with the Peptide Ligand Gly-His-Arg-Pro-amide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fibrinogen alpha/alpha-E chain, ...
Authors:Kostelansky, M.S, Gorkun, O.V, Lord, S.T.
Deposit date:2003-11-07
Release date:2004-03-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Calcium-Binding Site beta2, Adjacent to the "b" Polymerization Site, Modulates Lateral Aggregation of Protofibrils during Fibrin Polymerization.
Biochemistry, 43, 2004
6WPM
DownloadVisualize
BU of 6wpm by Molmil
Crystal structure of a putative oligosaccharide periplasmic-binding protein from Synechococcus sp. MITs9220 in complex with zinc
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, SULFATE ION, ...
Authors:Ford, B.A, Michie, K.A, Paulsen, I.T, Mabbutt, B.C, Shah, B.S.
Deposit date:2020-04-27
Release date:2021-05-12
Last modified:2022-04-27
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Novel functional insights into a modified sugar-binding protein from Synechococcus MITS9220.
Sci Rep, 12, 2022
6X58
DownloadVisualize
BU of 6x58 by Molmil
MPER-Fluc-Ec2 bound to 10E8v4 antibody
Descriptor: 10E8v4 Fab Heavy Chain, 10E8v4 Fab Light Chain, gp41 MPER peptide,Putative fluoride ion transporter CrcB
Authors:McIlwain, B.C, Stockbridge, R.B.
Deposit date:2020-05-25
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.26 Å)
Cite:N-terminal Transmembrane-Helix Epitope Tag for X-ray Crystallography and Electron Microscopy of Small Membrane Proteins.
J.Mol.Biol., 433, 2021
1RSR
DownloadVisualize
BU of 1rsr by Molmil
azide complex of the diferrous F208A mutant R2 subunit of ribonucleotide reductase
Descriptor: AZIDE ION, FE (II) ION, MERCURY (II) ION, ...
Authors:Andersson, M.E, Hogbom, M, Rinaldo-Matthis, A, Andersson, K.K, Sjoberg, B.M, Nordlund, P.
Deposit date:2003-12-10
Release date:2003-12-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of an Azide Complex of the Diferrous R2 Subunit of Ribonucleotide Reductase Displays a Novel Carboxylate Shift with Important Mechanistic Implications for Diiron-Catalyzed Oxygen Activation
J.Am.Chem.Soc., 121, 1999
5LZH
DownloadVisualize
BU of 5lzh by Molmil
Cholera toxin classical B-pentamer in complex with inhibitor PC262
Descriptor: (2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-[4-[3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]ethylamino]-3-oxidanylidene-propyl]-1,2,3-triazol-1-yl]-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid, (4R)-2-METHYLPENTANE-2,4-DIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Heggelund, J.E, Martinsen, T, Krengel, U.
Deposit date:2016-09-29
Release date:2017-05-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Towards new cholera prophylactics and treatment: Crystal structures of bacterial enterotoxins in complex with GM1 mimics.
Sci Rep, 7, 2017
6DNU
DownloadVisualize
BU of 6dnu by Molmil
Crystal Structure of Neisseria meningitidis DsbD c-terminal domain in the oxidised form
Descriptor: HEXAETHYLENE GLYCOL, Thiol:disulfide interchange protein DsbD
Authors:Heras, B, Smith, R.P, Paxman, J.J.
Deposit date:2018-06-07
Release date:2018-09-12
Last modified:2018-11-07
Method:X-RAY DIFFRACTION (2.283 Å)
Cite:Structural and biochemical insights into the disulfide reductase mechanism of DsbD, an essential enzyme for neisserial pathogens.
J. Biol. Chem., 293, 2018
8T5S
DownloadVisualize
BU of 8t5s by Molmil
Cryo-EM structure of DRH-1 helicase and C-terminal domain bound to dsRNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Dicer-related helicase, MAGNESIUM ION, ...
Authors:Consalvo, C.D, Donelick, H.M, Shen, P.S, Bass, B.L.
Deposit date:2023-06-14
Release date:2024-05-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Caenorhabditis elegans Dicer acts with the RIG-I-like helicase DRH-1 and RDE-4 to cleave dsRNA.
Elife, 13, 2024
6WK5
DownloadVisualize
BU of 6wk5 by Molmil
Crystal structure of Gdx-Clo from Small Multidrug Resistance family of transporters
Descriptor: L10 monobody, Multidrug resistance protein, SMR family
Authors:Kermani, A.A, Stockbridge, R.B.
Deposit date:2020-04-15
Release date:2020-10-28
Last modified:2020-12-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The structural basis of promiscuity in small multidrug resistance transporters.
Nat Commun, 11, 2020
6DA6
DownloadVisualize
BU of 6da6 by Molmil
Crystal structure of the TtnD decarboxylase from the tautomycetin biosynthesis pathway of Streptomyces griseochromogenes, apo form at 2.6 A resolution (P212121)
Descriptor: GLYCEROL, MAGNESIUM ION, UNKNOWN LIGAND, ...
Authors:Han, L, Rudolf, J.D, Chang, C.-Y, Miller, M.D, Soman, J, Phillips Jr, G.N, Shen, B, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2018-05-01
Release date:2018-10-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Biochemical and Structural Characterization of TtnD, a Prenylated FMN-Dependent Decarboxylase from the Tautomycetin Biosynthetic Pathway.
ACS Chem. Biol., 13, 2018
4JYJ
DownloadVisualize
BU of 4jyj by Molmil
Crystal Structure of putative enoyl-CoA hydratase/isomerase from Novosphingobium aromaticivorans DSM 12444
Descriptor: Enoyl-CoA hydratase/isomerase, UNKNOWN LIGAND
Authors:Cooper, D.R, Porebski, P.J, Domagalski, M.J, Ahmed, M, Stead, M, Hillerich, B, Seidel, R, Zimmerman, M, Bonanno, J.B, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-03-29
Release date:2013-05-29
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of putative enoyl-CoA hydratase/isomerase from Novosphingobium aromaticivorans DSM 12444
To be Published
6QJU
DownloadVisualize
BU of 6qju by Molmil
Crystal structure of human Bromodomain containing protein 3 (BRD3) in complex with 3-bromo-1H-indazol-5-amine
Descriptor: 1,2-ETHANEDIOL, 3-bromanyl-2~{H}-indazol-5-amine, Bromodomain-containing protein 3, ...
Authors:Braun, M.B, Stehle, T, Heidrich, J.
Deposit date:2019-01-25
Release date:2020-02-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.202 Å)
Cite:Br-O-modomain (BRD3) halogen binding to a small molecule
To Be Published
1QKG
DownloadVisualize
BU of 1qkg by Molmil
DNA DECAMER DUPLEX CONTAINING T-T DEWAR PHOTOPRODUCT
Descriptor: DNA (5'-D(*CP*GP*CP*AP*(HYD)TP*+TP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*AP*TP*GP*CP*G)-3')
Authors:Lee, J.-H, Bae, S.-H, Choi, Y.-J, Choi, B.-S.
Deposit date:1999-07-20
Release date:2000-05-11
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The Dewar Photoproduct of Thymidylyl(3'-->5')-Thymidine (Dewar Product) Exhibits Mutagenic Behavior in Accordance with the "A Rule".
Proc.Natl.Acad.Sci.USA, 97, 2000

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon