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2WX1
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BU of 2wx1 by Molmil
TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked tri-ubiquitin, P212121
Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION
Authors:Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D.
Deposit date:2009-10-30
Release date:2009-11-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain
Nat.Struct.Mol.Biol., 16, 2009
2WYQ
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BU of 2wyq by Molmil
THE CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE (UBL) DOMAIN OF HHR23A (HUMAN HOMOLOGUE A OF RAD23)
Descriptor: SULFATE ION, UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A
Authors:Chen, Y.W.
Deposit date:2009-11-19
Release date:2010-11-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:The Crystal Structure of the Ubiquitin-Like (Ubl) Domain of Human Homologue a of Rad23 (Hhr23A) Protein
Protein Eng.Des.Sel., 24, 2011
3EHV
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BU of 3ehv by Molmil
X-ray structure of human ubiquitin Zn(II) adduct
Descriptor: Ubiquitin, ZINC ION
Authors:Falini, G, Fermani, S, Tosi, G.
Deposit date:2008-09-15
Release date:2009-03-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural probing of Zn(II), Cd(II) and Hg(II) binding to human ubiquitin.
Chem.Commun.(Camb.), 45, 2008
3EFU
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BU of 3efu by Molmil
X-ray structure of human ubiquitin-Hg(II) adduct
Descriptor: MERCURY (II) ION, Ubiquitin
Authors:Falini, G, Fermani, S, Tosi, G.
Deposit date:2008-09-10
Release date:2008-12-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural probing of Zn(ii), Cd(ii) and Hg(ii) binding to human ubiquitin.
Chem.Commun.(Camb.), 45, 2008
3EEC
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BU of 3eec by Molmil
X-ray structure of human ubiquitin Cd(II) adduct
Descriptor: CADMIUM ION, Ubiquitin
Authors:Falini, G, Fermani, S, Tosi, G, Arnesano, F, Natile, G.
Deposit date:2008-09-04
Release date:2009-03-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural probing of Zn(II), Cd(II) and Hg(II) binding to human ubiquitin.
Chem.Commun.(Camb.), 45, 2008
3H1U
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BU of 3h1u by Molmil
Structure of ubiquitin in complex with Cd ions
Descriptor: CADMIUM ION, Ubiquitin
Authors:Qureshi, I.A, Ferron, F, Cheung, P, Lescar, J.
Deposit date:2009-04-14
Release date:2009-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic structure of ubiquitin in complex with cadmium ions
BMC RES NOTES, 2, 2009
3H7S
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BU of 3h7s by Molmil
Crystal structures of K63-linked di- and tri-ubiquitin reveal a highly extended chain architecture
Descriptor: Ubiquitin, ZINC ION
Authors:Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
Deposit date:2009-04-28
Release date:2009-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
3HM3
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BU of 3hm3 by Molmil
The Structure and conformation of Lys-63 linked tetra-ubiquitin
Descriptor: Ubiquitin, ZINC ION
Authors:Datta, A.B, Hura, G.L, Wolberger, C.
Deposit date:2009-05-28
Release date:2009-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The structure and conformation of Lys63-linked tetraubiquitin.
J.Mol.Biol., 392, 2009
3H7P
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BU of 3h7p by Molmil
Crystal structure of K63-linked di-ubiquitin
Descriptor: CADMIUM ION, Ubiquitin
Authors:Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J.
Deposit date:2009-04-28
Release date:2009-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture.
Proteins, 77, 2009
4WZP
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BU of 4wzp by Molmil
Ser65 phosphorylated ubiquitin, major conformation
Descriptor: SULFATE ION, ubiquitin
Authors:Wauer, T, Wagstaff, J, Freund, S.M.V, Komander, D.
Deposit date:2014-11-20
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis.
Embo J., 34, 2015
6W9S
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BU of 6w9s by Molmil
Crystal structure of an OTU deubiquitinase from Escherichia albertii bound to ubiquitin
Descriptor: FORMIC ACID, OTU domain-containing protein EschOTU, Ubiquitin
Authors:Schubert, A.F, Pruneda, J.N, Komander, D.
Deposit date:2020-03-23
Release date:2020-07-01
Last modified:2020-08-12
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification and characterization of diverse OTU deubiquitinases in bacteria.
Embo J., 39, 2020
2D3G
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BU of 2d3g by Molmil
Double sided ubiquitin binding of Hrs-UIM
Descriptor: ubiquitin, ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase substrate
Authors:Hirano, S, Kawasaki, M, Kato, R, Wakatsuki, S.
Deposit date:2005-09-28
Release date:2005-12-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting
Nat.Struct.Mol.Biol., 13, 2006
2BWF
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BU of 2bwf by Molmil
Crystal structure of the UBL domain of Dsk2 from S. cerevisiae
Descriptor: FORMIC ACID, UBIQUITIN-LIKE PROTEIN DSK2
Authors:Lowe, E.D, Hasan, N, Trempe, J.-F, Fonso, L, Noble, M.E.M, Endicott, J.A, Johnson, L.N, Brown, N.R.
Deposit date:2005-07-13
Release date:2006-01-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structures of the Dsk2 Ubl and Uba Domains and Their Complex.
Acta Crystallogr.,Sect.D, 62, 2006
2DAF
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BU of 2daf by Molmil
Solution Structure of the Novel Identified Ubiquitin-like Domain in the Human Hypothetical Protein FLJ35834
Descriptor: FLJ35834 protein
Authors:Zhao, C, Kigawa, T, Saito, K, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-14
Release date:2006-06-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of the Novel Identified Ubiquitin-like Domain in the Human Hypothetical Protein FLJ35834
To be Published
2BWE
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BU of 2bwe by Molmil
The crystal structure of the complex between the UBA and UBL domains of Dsk2
Descriptor: DSK2
Authors:Lowe, E.D, Hasan, N, Trempe, J.-F, Fonso, L, Noble, M.E.M, Endicott, J.A, Johnson, L.N, Brown, N.R.
Deposit date:2005-07-13
Release date:2006-01-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of the Dsk2 Ubl and Uba Domains and Their Complex.
Acta Crystallogr.,Sect.D, 62, 2006
6XQC
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BU of 6xqc by Molmil
UbKEKS
Descriptor: Polyubiquitin-B
Authors:Delattre, P, Letourneau, D, Lavigne, P, Roucou, X, Boisvert, F.M.
Deposit date:2020-07-09
Release date:2021-05-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of UbKEKS
To Be Published
2BGF
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BU of 2bgf by Molmil
NMR structure of Lys48-linked di-ubiquitin using chemical shift perturbation data together with RDCs and 15N-relaxation data
Descriptor: DI-UBIQUITIN
Authors:Van Dijk, A.D.J, Fushman, D, Bonvin, A.M.J.J.
Deposit date:2004-12-22
Release date:2005-08-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Various Strategies of Using Residual Dipolar Couplings in NMR-Driven Protein Docking: Application to Lys48-Linked Di-Ubiquitin and Validation Against 15N-Relaxation Data
Proteins: Struct., Funct., Bioinf., 60, 2005
2DEN
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BU of 2den by Molmil
Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin
Descriptor: Immunoglobulin G-binding protein G,Ubiquitin-like protein 7, Polyubiquitin-B
Authors:Hu, H.Y, Lin, D.H, Chang, Y.G.
Deposit date:2006-02-14
Release date:2006-06-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin
Protein Sci., 15, 2006
5TLA
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BU of 5tla by Molmil
Crystal structure of mouse ISG15
Descriptor: Ubiquitin-like protein ISG15
Authors:Goodwin, O.Y, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D.
Deposit date:2016-10-10
Release date:2017-05-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.244 Å)
Cite:Structural Insights into the Interaction of Coronavirus Papain-Like Proteases and Interferon-Stimulated Gene Product 15 from Different Species.
J. Mol. Biol., 429, 2017
2DZI
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BU of 2dzi by Molmil
2DZI/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Ubiquitin-like Protein 4A (GDX)
Descriptor: Ubiquitin-like protein 4A
Authors:Zhao, C, Sato, M, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-03-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:2DZI/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Ubiquitin-like Protein 4A (GDX)
To be Published
5TOG
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BU of 5tog by Molmil
Room temperature structure of ubiquitin variant u7ub25.2540
Descriptor: Polyubiquitin-B, SULFATE ION
Authors:Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S.
Deposit date:2016-10-17
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin.
Structure, 25, 2017
7F0N
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BU of 7f0n by Molmil
Structure of deamidated Ubiquitin
Descriptor: MAGNESIUM ION, POTASSIUM ION, SODIUM ION, ...
Authors:Chauhan, K, Varshney, N, Das, R.
Deposit date:2021-06-06
Release date:2022-06-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of deamidated Ubiquitin
To Be Published
4PIJ
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BU of 4pij by Molmil
X-ray crystal structure of the K11S/K63S double mutant of ubiquitin
Descriptor: GLYCEROL, SULFATE ION, Ubiquitin
Authors:Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L.
Deposit date:2014-05-08
Release date:2014-10-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014
4PIH
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BU of 4pih by Molmil
X-ray crystal structure of the K33S mutant of ubiquitin
Descriptor: CALCIUM ION, CHLORIDE ION, Ubiquitin
Authors:Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L.
Deposit date:2014-05-08
Release date:2014-10-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014
4PIG
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BU of 4pig by Molmil
Crystal structure of the ubiquitin K11S mutant
Descriptor: CALCIUM ION, CHLORIDE ION, SODIUM ION, ...
Authors:Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L.
Deposit date:2014-05-08
Release date:2014-10-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.952 Å)
Cite:Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014

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