Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7WP6
DownloadVisualize
BU of 7wp6 by Molmil
Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK in complex with three neutralizing antibodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 36H6 heavy chain, ...
Authors:Zheng, Q, Sun, H, Yuan, Q, Li, S, Xia, N.
Deposit date:2022-01-23
Release date:2023-03-01
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine.
Cell Host Microbe, 30, 2022
7WP8
DownloadVisualize
BU of 7wp8 by Molmil
Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK1628x in complex with three neutralizing antibodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2B4 heavy chain, ...
Authors:Zheng, Q, Sun, H, Yuan, Q, Li, S, Xia, N.
Deposit date:2022-01-23
Release date:2023-03-08
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine.
Cell Host Microbe, 30, 2022
1ZET
DownloadVisualize
BU of 1zet by Molmil
X-ray data do not support hoogsteen base-pairing during replication by human polymerase iota
Descriptor: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(P*AP*GP*GP*GP*(BRU)P*CP*CP*(BRU)P*(BRU)P*CP*CP*CP*CP*C)-3', MAGNESIUM ION, ...
Authors:Wang, J.
Deposit date:2005-04-19
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:DNA polymerases: Hoogsteen base-pairing in DNA replication?
Nature, 437, 2005
1IT3
DownloadVisualize
BU of 1it3 by Molmil
Hagfish CO ligand hemoglobin
Descriptor: CARBON MONOXIDE, PROTOPORPHYRIN IX CONTAINING FE, hemoglobin
Authors:Mito, M, Chong, K.T, Park, S.-Y, Tame, J.R.
Deposit date:2002-01-05
Release date:2002-01-23
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of deoxy- and carbonmonoxyhemoglobin F1 from the hagfish Eptatretus burgeri
J.Biol.Chem., 277, 2002
1GVH
DownloadVisualize
BU of 1gvh by Molmil
The X-ray structure of ferric Escherichia coli flavohemoglobin reveals an unespected geometry of the distal heme pocket
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, FLAVOHEMOPROTEIN, ...
Authors:Ilari, A, Johnson, K.A, Bonamore, A, Farina, A, Boffi, A.
Deposit date:2002-02-13
Release date:2002-08-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:The X-Ray Structure of Ferric Escherichia Coli Flavohemoglobin Reveals an Unexpected Geometry of the Distal Heme Pocket
J.Biol.Chem., 277, 2002
1IWH
DownloadVisualize
BU of 1iwh by Molmil
Crystal Structure of Horse Carbonmonoxyhemoglobin-Bezafibrate Complex at 1.55A Resolution: A Novel Allosteric Binding Site in R-State Hemoglobin
Descriptor: 2-[P-[2-P-CHLOROBENZAMIDO)ETHYL]PHENOXY]-2-METHYLPROPIONIC ACID, CARBON MONOXIDE, Hemoglobin alpha chain, ...
Authors:Shibayama, N, Miura, S, Tame, J.R.H, Yonetani, T, Park, S.-Y.
Deposit date:2002-05-15
Release date:2002-10-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of Horse Carbonmonoxyhemoglobin-Bezafibrate Complex at 1.55A Resolution. A Novel Allosteric Binding Site in R-State Hemoglobin
J.BIOL.CHEM., 277, 2002
1H25
DownloadVisualize
BU of 1h25 by Molmil
CDK2/Cyclin A in complex with an 11-residue recruitment peptide from retinoblastoma-associated protein
Descriptor: CELL DIVISION PROTEIN KINASE 2, CYCLIN A2, RETINOBLASTOMA-ASSOCIATED PROTEIN
Authors:Tews, I, Cheng, K.Y, Lowe, E.D, Noble, M.E.M, Brown, N.R, Gul, S, Gamblin, S, Johnson, L.N.
Deposit date:2002-07-31
Release date:2003-02-01
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Specificity Determinants of Recruitment Peptides Bound to Phospho-Cdk2/Cyclin A
Biochemistry, 41, 2002
1HBG
DownloadVisualize
BU of 1hbg by Molmil
GLYCERA DIBRANCHIATA HEMOGLOBIN. STRUCTURE AND REFINEMENT AT 1.5 ANGSTROMS RESOLUTION
Descriptor: CARBON MONOXIDE, HEMOGLOBIN (CARBONMONOXY), PROTOPORPHYRIN IX CONTAINING FE
Authors:Arents, G.A, Braden, B.C, Padlan, E.A, Love, W.E.
Deposit date:1991-02-11
Release date:1992-07-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Glycera dibranchiata hemoglobin. Structure and refinement at 1.5 A resolution.
J.Mol.Biol., 210, 1989
1VXD
DownloadVisualize
BU of 1vxd by Molmil
NATIVE SPERM WHALE MYOGLOBIN
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Yang, F, Phillips Jr, G.N.
Deposit date:1996-01-09
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.
J.Mol.Biol., 256, 1996
1VXG
DownloadVisualize
BU of 1vxg by Molmil
NATIVE SPERM WHALE MYOGLOBIN
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Yang, F, Phillips Jr, G.N.
Deposit date:1996-01-09
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.
J.Mol.Biol., 256, 1996
1VXF
DownloadVisualize
BU of 1vxf by Molmil
NATIVE SPERM WHALE MYOGLOBIN
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Yang, F, Phillips Jr, G.N.
Deposit date:1996-01-09
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.
J.Mol.Biol., 256, 1996
1VXH
DownloadVisualize
BU of 1vxh by Molmil
NATIVE SPERM WHALE MYOGLOBIN
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Yang, F, Phillips Jr, G.N.
Deposit date:1996-01-09
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.
J.Mol.Biol., 256, 1996
1VXA
DownloadVisualize
BU of 1vxa by Molmil
NATIVE SPERM WHALE MYOGLOBIN
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Yang, F, Phillips Jr, G.N.
Deposit date:1996-01-09
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.
J.Mol.Biol., 256, 1996
1VXC
DownloadVisualize
BU of 1vxc by Molmil
NATIVE SPERM WHALE MYOGLOBIN
Descriptor: CARBON MONOXIDE, MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Yang, F, Phillips Jr, G.N.
Deposit date:1996-01-09
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.
J.Mol.Biol., 256, 1996
1VXB
DownloadVisualize
BU of 1vxb by Molmil
NATIVE SPERM WHALE MYOGLOBIN
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Yang, F, Phillips Jr, G.N.
Deposit date:1996-01-09
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.
J.Mol.Biol., 256, 1996
1VXE
DownloadVisualize
BU of 1vxe by Molmil
NATIVE SPERM WHALE MYOGLOBIN
Descriptor: MYOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Yang, F, Phillips Jr, G.N.
Deposit date:1996-01-09
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.
J.Mol.Biol., 256, 1996
1UX8
DownloadVisualize
BU of 1ux8 by Molmil
X-ray structure of truncated oxygen-avid haemoglobin from Bacillus subtilis
Descriptor: CHLORIDE ION, CYANIDE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ilari, A, Giangiacomo, L, Boffi, A, Chiancone, E.
Deposit date:2004-02-20
Release date:2004-12-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The Truncated Oxygen-Avid Hemoglobin from Bacillus Subtilis: X-Ray Structure and Ligand Binding Properties
J.Biol.Chem., 280, 2005
1V07
DownloadVisualize
BU of 1v07 by Molmil
CRYSTAL STRUCTURE OF ThrE11Val mutant of THE NERVE TISSUE MINI-HEMOGLOBIN FROM THE NEMERTEAN WORM CEREBRATULUS LACTEUS
Descriptor: NEURAL HEMOGLOBIN, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Pesce, A, Nardini, M, Ascenzi, P, Geuens, E, Dewilde, S, Moens, L, Bolognesi, M, Riggs, A, Hale, A, Deng, P, Nienhaus, G.U, Olson, J.S, Nienhaus, K.
Deposit date:2004-03-24
Release date:2004-06-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Thr-E11 Regulates O2 Affinity in Cerebratulus Lacteus Mini-Hemoglobin
J.Biol.Chem., 279, 2004
1IDR
DownloadVisualize
BU of 1idr by Molmil
CRYSTAL STRUCTURE OF THE TRUNCATED-HEMOGLOBIN-N FROM MYCOBACTERIUM TUBERCULOSIS
Descriptor: HEMOGLOBIN HBN, OXYGEN MOLECULE, PHOSPHATE ION, ...
Authors:Milani, M, Pesce, A, Ascenzi, P, Guertin, M, Bolognesi, M.
Deposit date:2001-04-05
Release date:2001-08-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mycobacterium tuberculosis hemoglobin N displays a protein tunnel suited for O2 diffusion to the heme.
EMBO J., 20, 2001
1IT2
DownloadVisualize
BU of 1it2 by Molmil
Hagfish deoxy hemoglobin
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, hemoglobin
Authors:Mito, M, Chong, K.T, Park, S.-Y, Tame, J.R.
Deposit date:2002-01-05
Release date:2002-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of deoxy- and carbonmonoxyhemoglobin F1 from the hagfish Eptatretus burgeri
J.Biol.Chem., 277, 2002
7QXX
DownloadVisualize
BU of 7qxx by Molmil
Proteasome-ZFAND5 Complex Z+E state
Descriptor: 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, 26S protease regulatory subunit 7, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Molecular mechanism for activation of the 26S proteasome by ZFAND5.
Mol.Cell, 83, 2023
7QY7
DownloadVisualize
BU of 7qy7 by Molmil
Proteasome-ZFAND5 Complex Z-A state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-27
Release date:2023-02-08
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Molecular mechanism for activation of the 26S proteasome by ZFAND5.
Mol.Cell, 83, 2023
7QXP
DownloadVisualize
BU of 7qxp by Molmil
Proteasome-ZFAND5 Complex Z+B state
Descriptor: 26S protease regulatory subunit 4, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B, ...
Authors:Zhu, Y, Lu, Y.
Deposit date:2022-01-26
Release date:2023-02-08
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular mechanism for activation of the 26S proteasome by ZFAND5.
Mol.Cell, 83, 2023
8X47
DownloadVisualize
BU of 8x47 by Molmil
Crystal structure of DIMT1 in complex with S-adenosyl-L-homocysteine (SAH) from Pyrococcus horikoshii
Descriptor: 1,2-ETHANEDIOL, ARGININE, DI(HYDROXYETHYL)ETHER, ...
Authors:Saha, S, Dutta, A, Kanaujia, S.P.
Deposit date:2023-11-15
Release date:2024-08-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and functional characterization of archaeal DIMT1 unveils distinct protein dynamics essential for efficient catalysis.
Structure, 32, 2024
8X45
DownloadVisualize
BU of 8x45 by Molmil
Crystal structure of DIMT1 in complex with 5'-methylthioadenosine from Pyrococcus horikoshii (FormII)
Descriptor: 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, ACETATE ION, ...
Authors:Saha, S, Kanaujia, S.P.
Deposit date:2023-11-15
Release date:2024-08-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional characterization of archaeal DIMT1 unveils distinct protein dynamics essential for efficient catalysis.
Structure, 32, 2024

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon