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8RBI
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BU of 8rbi by Molmil
Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124
Descriptor: Alginate lyase, DI(HYDROXYETHYL)ETHER, SODIUM ION
Authors:Wilkens, C.
Deposit date:2023-12-04
Release date:2024-01-17
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124
To Be Published
8BDD
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BU of 8bdd by Molmil
Crystal structure of Bacteroides ovatus CP926 PL17 alginate lyase
Descriptor: Alginate lyase family protein, NICKEL (II) ION
Authors:Roenne, M.E, Tandrup, T, Wilkens, C.
Deposit date:2022-10-19
Release date:2023-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.
Appl.Environ.Microbiol., 89, 2023
1L2U
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BU of 1l2u by Molmil
Orotidine 5'-monophosphate decarboxylase from E. coli
Descriptor: Orotidine 5'-phosphate decarboxylase
Authors:Harris, P, Poulsen, J.C, Jensen, K.F, Larsen, S.
Deposit date:2002-02-25
Release date:2002-03-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate binding induces domain movements in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 18, 2002
8BDQ
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BU of 8bdq by Molmil
Crystal structure of Bacteroides ovatus CP926 PL38 alginate lyase
Descriptor: Alginate lyase family protein, SULFATE ION
Authors:Roenne, M.E, Tandrup, T, Wilkens, C.
Deposit date:2022-10-19
Release date:2023-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.
Appl.Environ.Microbiol., 89, 2023
8B79
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BU of 8b79 by Molmil
The crystal structure of M644G variant of DNA Pol Epsilon containing UTP in the polymerase active site
Descriptor: ACETATE ION, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ...
Authors:Parkash, V, Johansson, E.
Deposit date:2022-09-29
Release date:2023-10-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides.
Nucleic Acids Res., 2023
8BJO
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BU of 8bjo by Molmil
Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F in complex with hexa-mannuronic acid
Descriptor: Alginate lyase, SULFATE ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Wilkens, C, Morth, J.P.
Deposit date:2022-11-04
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F in complex with hexa-mannuronic acid
To Be Published
8AXS
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BU of 8axs by Molmil
Sialidases and Fucosidases of Akkermansia muciniphila are key for rapid growth on colonic mucin and nutrient sharing amongst mucin-associated human gut microbiota
Descriptor: 1,2-ETHANEDIOL, 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, CALCIUM ION, ...
Authors:Sakanaka, H, Nielsen, T.S, Pichler, M.J, Nordberg Karlsson, E, Abou Hachem, M, Morth, J.P.
Deposit date:2022-08-31
Release date:2023-03-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Sialidases and fucosidases of Akkermansia muciniphila are crucial for growth on mucin and nutrient sharing with mucus-associated gut bacteria.
Nat Commun, 14, 2023
8AXI
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BU of 8axi by Molmil
Sialidases and Fucosidases of Akkermansia muciniphila are key for rapid growth on colonic mucin and nutrient sharing amongst mucin-associated human gut microbiota
Descriptor: 1,2-ETHANEDIOL, 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, CALCIUM ION, ...
Authors:Sakanaka, H, Nielsen, T.S, Pichler, M.J, Nordberg Karlsson, E, Abou Hachem, M, Morth, J.P.
Deposit date:2022-08-31
Release date:2023-03-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Sialidases and fucosidases of Akkermansia muciniphila are crucial for growth on mucin and nutrient sharing with mucus-associated gut bacteria.
Nat Commun, 14, 2023
1JQP
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dipeptidyl peptidase I (cathepsin C), a tetrameric cysteine protease of the papain family
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, SULFATE ION, ...
Authors:Olsen, J.G, Kadziola, A, Lauritzen, C, Pedersen, J, Larsen, S, Dahl, S.W.
Deposit date:2001-08-08
Release date:2002-10-18
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Tetrameric dipeptidyl peptidase I directs substrate specificity by use of the residual pro-part domain
FEBS LETT., 506, 2001
8AWI
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BU of 8awi by Molmil
Crystal structure of Human Transthyretin at 1.15 Angstrom resolution
Descriptor: SODIUM ION, Transthyretin
Authors:Derbyshire, D.J, Hammarstrom, P, von Castelmur, E, Begum, A.
Deposit date:2022-08-29
Release date:2023-03-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Transthyretin Binding Mode Dichotomy of Fluorescent trans -Stilbene Ligands.
Acs Chem Neurosci, 14, 2023
8PXU
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BU of 8pxu by Molmil
Targeting extended blood antigens by Akkermansia muciniphila enzymes unveils a missing link for generating universal donor blood
Descriptor: Beta-N-acetylhexosaminidase, CACODYLATE ION
Authors:Jensen, M, Abou Hachem, M, Morth, J.P.
Deposit date:2023-07-24
Release date:2024-02-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Akkermansia muciniphila exoglycosidases target extended blood group antigens to generate ABO-universal blood.
Nat Microbiol, 9, 2024
8PXV
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BU of 8pxv by Molmil
Targeting extended blood antigens by Akkermansia muciniphila enzymes unveils a missing link for generating universal donor blood
Descriptor: Beta-N-acetylhexosaminidase, GLYCEROL, SODIUM ION, ...
Authors:Weikum, J, Jensen, M, Abou Hachem, M, Morth, J.P.
Deposit date:2023-07-24
Release date:2024-02-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Akkermansia muciniphila exoglycosidases target extended blood group antigens to generate ABO-universal blood.
Nat Microbiol, 9, 2024
1JF2
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BU of 1jf2 by Molmil
Crystal Structure of W92F obelin mutant from Obelia longissima at 1.72 Angstrom resolution
Descriptor: C2-HYDROPEROXY-COELENTERAZINE, obelin
Authors:Liu, Z.-J, Vysotski, E.S, Deng, L, Markova, S.V, Lee, J, Rose, J.P, Wang, B.-C.
Deposit date:2001-06-19
Release date:2001-07-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Violet bioluminescence and fast kinetics from W92F obelin: structure-based proposals for the bioluminescence triggering and the identification of the emitting species.
Biochemistry, 42, 2003
8PVS
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BU of 8pvs by Molmil
Targeting extended blood antigens by Akkermansia muciniphila enzymes unveils a missing link for generating universal donor blood
Descriptor: 1,2-ETHANEDIOL, Alpha-1,3-galactosidase B, CALCIUM ION, ...
Authors:Jensen, M, Abou Hachem, M, Morth, J.P.
Deposit date:2023-07-18
Release date:2024-02-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Akkermansia muciniphila exoglycosidases target extended blood group antigens to generate ABO-universal blood.
Nat Microbiol, 9, 2024
8BPD
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BU of 8bpd by Molmil
Structural and Functional Characterization of the Novel Endo-alpha(1,4)-Fucoidanase Mef1 from the Marine Bacterium Muricauda eckloniae
Descriptor: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Mikkelsen, M.D, Meyer, A.S, Morth, J.P.
Deposit date:2022-11-16
Release date:2023-11-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional characterization of the novel endo-alpha (1,4)-fucoidanase Mef1 from the marine bacterium Muricauda eckloniae.
Acta Crystallogr D Struct Biol, 79, 2023
8BQ7
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BU of 8bq7 by Molmil
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH2829
Descriptor: GLYCEROL, N-glycosylase/DNA lyase, NICKEL (II) ION, ...
Authors:Scaletti, E, Stenmark, P.
Deposit date:2022-11-19
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH2829
To Be Published
1LO5
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BU of 1lo5 by Molmil
Crystal structure of the D227A variant of Staphylococcal enterotoxin A in complex with human MHC class II
Descriptor: HLA class II histocompatibility antigen, DR alpha chain, DR-1 beta chain, ...
Authors:Petersson, K, Thunnissen, M, Forsberg, G, Walse, B.
Deposit date:2002-05-06
Release date:2002-12-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of a SEA Variant in Complex with MHC Class II Reveals the Ability of SEA to Crosslink MHC Molecules
Structure, 10, 2002
8BWK
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BU of 8bwk by Molmil
Metagenomic derived PL6 alginate lyase
Descriptor: Alginate lyase, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Angen, E.F, Wilkens, C.
Deposit date:2022-12-06
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Metagenomic derived PL6 alginate lyase
To Be Published
1LEL
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BU of 1lel by Molmil
The avidin BCAP complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Avidin, E-AMINO BIOTINYL CAPROIC ACID
Authors:Pazy, Y, Kulik, T, Bayer, E.A, Wilchek, M, Livnah, O.
Deposit date:2002-04-10
Release date:2002-11-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Ligand exchange between proteins: exchange of biotin and biotin derivatives between avidin and streptavidin
J.Biol.Chem., 277, 2002
8B8E
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BU of 8b8e by Molmil
Wild-type GH11 from Blastobotrys mokoenaii
Descriptor: 1,2-ETHANEDIOL, BmGH11, DI(HYDROXYETHYL)ETHER, ...
Authors:Coleman, T, Ravn, J.L, Larsbrink, J.
Deposit date:2022-10-04
Release date:2023-05-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Yeasts Have Evolved Divergent Enzyme Strategies To Deconstruct and Metabolize Xylan.
Microbiol Spectr, 11, 2023
8BBJ
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BU of 8bbj by Molmil
Secretagogin (mouse) in complex with its target peptide from Syntaxin-4
Descriptor: CACODYLATE ION, CALCIUM ION, Green fluorescent protein,Syntaxin-4, ...
Authors:Schnell, R, Szodorai, E.
Deposit date:2022-10-13
Release date:2024-04-03
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A hydrophobic groove in secretagogin allows for alternate interactions with SNAP-25 and syntaxin-4 in endocrine tissues.
Proc.Natl.Acad.Sci.USA, 121, 2024
8BVX
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BU of 8bvx by Molmil
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH13264
Descriptor: 1,2-ETHANEDIOL, N-glycosylase/DNA lyase, NICKEL (II) ION, ...
Authors:Scaletti, E, Stenmark, P.
Deposit date:2022-12-05
Release date:2024-05-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH13264
To Be Published
8C7O
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BU of 8c7o by Molmil
Unliganded transcriptional pleiotropic repressor CodY from Staphylococcus aureus
Descriptor: ACETATE ION, Global transcriptional regulator CodY, SULFATE ION
Authors:Hainzl, T, Sauer-Eriksson, A.E.
Deposit date:2023-01-16
Release date:2023-06-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural insights into CodY activation and DNA recognition.
Nucleic Acids Res., 51, 2023
8C5N
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BU of 8c5n by Molmil
Sub-atomic resolution structure of the chitin-binding protein D (CbpD) from Pseudomonas aeruginosa
Descriptor: CHLORIDE ION, Chitin-binding protein CbpD
Authors:Cordara, G, Krengel, U, Golten, O, Vaaje-Kolstad, G, Vinther Soerensen, H.
Deposit date:2023-01-09
Release date:2023-06-28
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (0.75 Å)
Cite:Immunization with lytic polysaccharide monooxygenase CbpD induces protective immunity against Pseudomonas aeruginosa pneumonia.
Proc.Natl.Acad.Sci.USA, 120, 2023
1KDG
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BU of 1kdg by Molmil
Crystal structure of the flavin domain of cellobiose dehydrogenase
Descriptor: 2-(ETHYLMERCURI-THIO)-BENZOIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Hallberg, B.M, Henriksson, G, Pettersson, G, Divne, C.
Deposit date:2001-11-13
Release date:2002-11-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of the Flavoprotein Domain of the Extracellular Flavocytochrome Cellobiose Dehydrogenase
J.Mol.Biol., 315, 2002

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PDB entries from 2024-07-17

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