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5VHV	Pseudomonas fluorescens alkylpurine DNA glycosylase AlkC bound to DNA containing an oxocarbenium-intermediate analog Descriptor: (2R,5R,13R,16R)-9-(hydroxymethyl)-9-{[(2R)-2-hydroxypropoxy]methyl}-5,13-dimethyl-4,7,11,14-tetraoxaheptadecane-2,16-diol, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3'), ... Authors: Shi, R, Eichman, B.F. Deposit date: 2017-04-13 Release date: 2017-10-25 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.799 Å) Cite: Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC. EMBO J., 37, 2018
7U3P	[3T7] Self-assembling tensegrity triangle with three turns of DNA per axis with R3 symmetry Descriptor: DNA (31-MER), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3'), ... Authors: Woloszyn, K, Vecchioni, S, Lu, B, Ma, Y, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2022-02-28 Release date: 2022-09-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (6.06 Å) Cite: Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
8CMM	Re-pairing DNA - binding of a ruthenium phi complex to a double mismatch Descriptor: DNA (5'-D(*CP*GP*CP*TP*AP*TP*AP*AP*TP*GP*CP*G)-3'), LITHIUM ION, POTASSIUM ION, ... Authors: Prieto Otoya, T.D, Cardin, C.J, McQuaid, K.M. Deposit date: 2023-02-20 Release date: 2024-03-06 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (0.9 Å) Cite: Re-pairing DNA: binding of a ruthenium phi complex to a double mismatch. Chem Sci, 15, 2024
8IJO	Structure of DNA binding domain of McrBC endonuclease bound to DNA: Y41F-L68F double mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-27 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
8IK4	Structure of DNA binding domain of McrBC endonuclease bound to hemimethylated DNA: L68F mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*AP*GP*AP*(5CM)P*CP*GP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*TP*CP*T)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-28 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
8IK8	Structure of DNA binding domain of McrBC endonuclease bound to DNA: L68F mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-28 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
8IJP	Structure of DNA binding domain of McrBC endonuclease bound to DNA: L68Y mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-27 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
8IKD	Structure of DNA binding domain of McrBC endonuclease bound to DNA: Y41F-L68Y double mutant Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... Authors: Adhav, V.A, Saikrishnan, K. Deposit date: 2023-02-28 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
6ZYC	Solution structure of the C-terminal domain of the vaccinia virus DNA polymerase processivity factor component A20. Descriptor: DNA polymerase processivity factor component A20 Authors: Bersch, B, Iseni, F, Burmeister, W, Tarbouriech, N. Deposit date: 2020-07-31 Release date: 2021-05-19 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Solution Structure of the C-terminal Domain of A20, the Missing Brick for the Characterization of the Interface between Vaccinia Virus DNA Polymerase and its Processivity Factor. J.Mol.Biol., 433, 2021
1D3X	INTRAMOLECULAR DNA TRIPLEX, NMR, 10 STRUCTURES Descriptor: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*CP*TP*T)-3'), DNA (5'-D(*TP*TP*CP*TP*CP*TP*CP*T)-3') Authors: Tarkoy, M, Phipps, A.K, Schultze, P, Feigon, J. Deposit date: 1998-02-05 Release date: 1998-05-06 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of an intramolecular DNA triplex linked by hexakis(ethylene glycol) units: d(AGAGAGAA-(EG)6-TTCTCTCT-(EG)6-TCTCTCTT). Biochemistry, 37, 1998
1CBV	AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX Descriptor: DNA (5'-D(*TP*TP*T)-3'), PROTEIN (FAB (BV04-01) AUTOANTIBODY-HEAVY CHAIN), PROTEIN (FAB (BV04-01) AUTOANTIBODY-LIGHT CHAIN) Authors: Herron, J.N, He, X.M, Ballard, D.W, Blier, P.R, Pace, P.E, Bothwell, A.L.M, Voss Junior, E.W, Edmundson, A.B. Deposit date: 1993-03-16 Release date: 1994-01-31 Last modified: 2017-11-29 Method: X-RAY DIFFRACTION (2.66 Å) Cite: An autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex. Proteins, 11, 1991
6K0W	DNA methyltransferase in complex with sinefungin Descriptor: Adenine specific DNA methyltransferase (Mod), SINEFUNGIN Authors: Narayanan, N, Nair, D.T. Deposit date: 2019-05-07 Release date: 2019-12-11 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Tetramerization at Low pH Licenses DNA Methylation Activity of M.HpyAXI in the Presence of Acid Stress. J.Mol.Biol., 432, 2020
3REK	2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin Descriptor: DNA (146-MER), Histone H2A type1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
3REJ	2.55 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Descriptor: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
1RVC	MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*T)-3'), DNA (5'-D(*AP*TP*CP*TP*T)-3'), MAGNESIUM ION, ... Authors: Kostrewa, D, Winkler, F.K. Deposit date: 1994-10-21 Release date: 1995-01-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution. Biochemistry, 34, 1995
3REI	2.65 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) Derivatized with Triamminechloroplatinum(II) Chloride Descriptor: DNA (145-MER), Histone H2A type1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
3REH	2.5 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) Descriptor: DNA (145-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
6MC4	Crystal structure of a tetrameric DNA fold-back quadruplex Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*TP*CP*AP*GP*GP*CP*G)-3'), POTASSIUM ION Authors: Chu, B, Paukstelis, P.J. Deposit date: 2018-08-30 Release date: 2018-11-14 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex. J. Am. Chem. Soc., 140, 2018
1RVA	MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), PROTEIN (ECO RV (E.C.3.1.21.4)) Authors: Kostrewa, D, Winkler, F.K. Deposit date: 1994-10-21 Release date: 1995-01-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution. Biochemistry, 34, 1995
1PU7	Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) bound to 3,9-dimethyladenine Descriptor: 3-METHYLADENINE DNA GLYCOSYLASE, 6-AMINO-3,9-DIMETHYL-9H-PURIN-3-IUM, BETA-MERCAPTOETHANOL Authors: Eichman, B.F, O'Rourke, E.J, Radicella, J.P, Ellenberger, T. Deposit date: 2003-06-24 Release date: 2003-10-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases Embo J., 22, 2003
6JNM	REF6 ZnF2-4-NAC004-mC3 complex Descriptor: DNA (5'-D(*CP*AP*AP*AP*AP*CP*AP*GP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*CP*TP*(5CM)P*TP*GP*TP*TP*TP*TP*G)-3'), Lysine-specific demethylase REF6, ... Authors: Yao, Q.Q, Wu, B.X, Ma, J.B. Deposit date: 2019-03-17 Release date: 2019-03-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.05 Å) Cite: DNA methylation repels targeting of Arabidopsis REF6. Nat Commun, 10, 2019
6JNN	REF6 ZnF2-4-NAC004-mC1 complex Descriptor: DNA (5'-D(*CP*AP*AP*AP*AP*CP*AP*GP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*(5CM)P*TP*CP*TP*GP*TP*TP*TP*TP*G)-3'), Lysine-specific demethylase REF6, ... Authors: Yao, Q.Q, Wu, B.X, Ma, J.B. Deposit date: 2019-03-17 Release date: 2019-03-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.6 Å) Cite: DNA methylation repels targeting of Arabidopsis REF6. Nat Commun, 10, 2019
1NOZ	T4 DNA POLYMERASE FRAGMENT (RESIDUES 1-388) AT 110K Descriptor: DNA POLYMERASE Authors: Wang, J, Yu, P, Lin, T.C, Konigsberg, W.H, Steitz, T.A. Deposit date: 1996-02-16 Release date: 1996-10-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions. Biochemistry, 35, 1996
1PU8	Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) bound to 1,N6-ethenoadenine Descriptor: 3-METHYLADENINE DNA GLYCOSYLASE, 3H-IMIDAZO[2,1-I]PURINE, BETA-MERCAPTOETHANOL Authors: Eichman, B.F, O'Rourke, E.J, Radicella, J.P, Ellenberger, T. Deposit date: 2003-06-24 Release date: 2003-10-07 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases Embo J., 22, 2003
6N4G	Crystal structure of a tetrameric DNA fold-back quadruplex Descriptor: BARIUM ION, DNA (5'-D(*CP*GP*TP*TP*AP*GP*GP*CP*G)-3') Authors: Chu, B, Paukstelis, P.J. Deposit date: 2018-11-19 Release date: 2018-12-05 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal Structure of a Tetrameric DNA Fold-Back Quadruplex. J. Am. Chem. Soc., 140, 2018

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