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PDB: 567 results

6XZF
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BU of 6xzf by Molmil
Nanobody in complex with eGFP
Descriptor: Nanobody targeted against eGFP, TERBIUM(III) ION, eGFP
Authors:Pompidor, G, Zimmermann, S, Loew, C, Schneider, T.
Deposit date:2020-02-04
Release date:2021-02-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Engineered nanobodies with a lanthanide binding motif for crystallographic phasing
To Be Published
2G5Z
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BU of 2g5z by Molmil
Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis and decarboxylation
Descriptor: Green fluorescent protein, MAGNESIUM ION
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2006-02-23
Release date:2006-04-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Understanding GFP Posttranslational Chemistry: Structures of Designed Variants that Achieve Backbone Fragmentation, Hydrolysis, and Decarboxylation.
J.Am.Chem.Soc., 128, 2006
4KW9
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BU of 4kw9 by Molmil
Crystal Structure of Green Fluorescent Protein
Descriptor: CHLORIDE ION, Green fluorescent protein, ZINC ION
Authors:Barnard, T.J, Yu, X, Noinaj, N, Taraska, J.W.
Deposit date:2013-05-23
Release date:2014-04-09
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Green Fluorescent Protein
To be Published
1RMO
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BU of 1rmo by Molmil
Probing the Role of Tryptophans in Aequorea Victoria Green Fluorescent Proteins with an Expanded Genetic Code
Descriptor: wunen-nonfunctional GFP fusion protein
Authors:Budisa, N, Pal, P.P, Alefelder, S, Birle, P, Krywcun, T, Rubini, M, Wenger, W, Bae, J.H, Steiner, T.
Deposit date:2003-11-28
Release date:2004-06-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Probing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code
Biol.Chem., 385, 2004
4IK9
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BU of 4ik9 by Molmil
High resolution structure of GCaMP3 dimer form 2 at pH 7.5
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, RCaMP, ...
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-01-29
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
7O7E
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BU of 7o7e by Molmil
Crystal structure of rsEGFP2 mutant V151L in the fluorescent on-state determined by synchrotron radiation at 100K
Descriptor: Green fluorescent protein
Authors:Woodhouse, J, Adam, V, Hadjidemetriou, K, Colletier, J.-P, Weik, M.
Deposit date:2021-04-13
Release date:2022-07-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Rational Control of Off-State Heterogeneity in a Photoswitchable Fluorescent Protein Provides Switching Contrast Enhancement.
Chemphyschem, 23, 2022
1JBY
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BU of 1jby by Molmil
CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT LOW PH
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Hanson, G.T, McAnaney, T.B, Park, E.S, Rendell, M.E.P, Yarbrough, D.K, Chu, S, Xi, L, Boxer, S.G, Montrose, M.H, Remington, S.J.
Deposit date:2001-06-07
Release date:2003-01-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Green Fluorescent Protein Variants as Ratiometric Dual Emission pH Sensors. 1. Structural Characterization and Preliminary Application.
Biochemistry, 41, 2002
2O29
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BU of 2o29 by Molmil
Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-BR Complex
Descriptor: BROMIDE ION, Green fluorescent protein
Authors:Garau, G.
Deposit date:2006-11-29
Release date:2007-05-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spectroscopic and Structural Study of Proton and Halide Ion Cooperative Binding to GFP.
Biophys.J., 93, 2007
5JZL
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BU of 5jzl by Molmil
The Structure of Monomeric Ultra Stable Green Fluorescent Protein
Descriptor: CHLORIDE ION, Green fluorescent protein, SODIUM ION
Authors:Gunn, N.J, Yong, K.J, Scott, D.J, Griffin, M.D.W.
Deposit date:2016-05-17
Release date:2017-12-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY.
Sci Rep, 8, 2018
3GJ1
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BU of 3gj1 by Molmil
Non photoactivated state of PA-GFP
Descriptor: CHLORIDE ION, Green fluorescent protein, SULFATE ION
Authors:Henderson, J.N, Gepshtein, R, Heenan, J.R, Kallio, K, Huppert, D, Remington, S.J.
Deposit date:2009-03-07
Release date:2009-03-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and mechanism of the photoactivatable green fluorescent protein.
J.Am.Chem.Soc., 131, 2009
1QYO
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BU of 1qyo by Molmil
Anaerobic precylization intermediate crystal structure for S65G Y66G GFP variant
Descriptor: green-fluorescent protein
Authors:Barondeau, D.P, Putnam, C.D, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2003-09-11
Release date:2003-09-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures.
Proc.Natl.Acad.Sci.Usa, 100, 2003
1HCJ
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BU of 1hcj by Molmil
Photoproduct of the wild-type Aequorea victoria Green Fluorescent Protein
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Van Thor, J.J, Gensch, T, Hellingwerf, K.J, Johnson, L.
Deposit date:2001-05-04
Release date:2001-12-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Phototransformation of Green Fluorescent Protein with Uv and Visible Light Leads to Decarboxylation of Glutamate 222
Nat.Struct.Biol., 9, 2002
1QS7
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BU of 1qs7 by Molmil
The 1.8 angstrom structure of calmodulin rs20 peptide complex
Descriptor: CALCIUM ION, CALMODULIN, RS20
Authors:Weigand, S, Anderson, W.F.
Deposit date:1999-06-25
Release date:2003-06-24
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High Resolution Structure of a Calmodulin Rs20 Peptide Complex
To be Published
3P28
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BU of 3p28 by Molmil
Structure of a Circular Permutant of Green Fluorescent Protein
Descriptor: Green fluorescent protein
Authors:Melief, E.H, Kim, H, Kim, T.S, Wachter, R.M, Tonge, P.J.
Deposit date:2010-10-01
Release date:2011-10-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Construction and Characterization of a Stable Circular Permutant of Green Fluorescent Protein
To be Published
8DTA
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BU of 8dta by Molmil
Metal sensitive GFP (mseGFP) complexed with phenylarsine oxide.
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Green fluorescent protein, ...
Authors:Rosenbaum, J.C, Carlson, A.E.
Deposit date:2022-07-25
Release date:2023-07-05
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Glutathione modulates metal binding to proteins.
TBD
8A83
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BU of 8a83 by Molmil
rsEGFP2 with a chlorinated chromophore in the fluorescent ON-state in a crystal dehydrated after illumination
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Fadini, A, van Thor, J, Chang, J.
Deposit date:2022-06-21
Release date:2023-07-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism.
J.Am.Chem.Soc., 145, 2023
6QQ9
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BU of 6qq9 by Molmil
Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 5.8 MGy
Descriptor: CARBON DIOXIDE, Green fluorescent protein
Authors:Gotthard, G, Aumonier, S, Royant, A.
Deposit date:2019-02-18
Release date:2019-06-19
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Specific radiation damage is a lesser concern at room temperature.
Iucrj, 6, 2019
2H9W
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BU of 2h9w by Molmil
Green fluorescent protein ground states: the influence of a second protonation site near the chromophore
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Garau, G.
Deposit date:2006-06-12
Release date:2007-04-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Green Fluorescent Protein Ground States: The Influence of a Second Protonation Site near the Chromophore.
Biochemistry, 46, 2007
4ZF4
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BU of 4zf4 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51)
Descriptor: Green fluorescent protein
Authors:Oltrogge, L.M, Boxer, S.G.
Deposit date:2015-04-21
Release date:2015-06-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.823 Å)
Cite:Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP).
Acs Cent.Sci., 1, 2015
8SFV
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BU of 8sfv by Molmil
High affinity nanobodies to GFP
Descriptor: GLYCEROL, Green fluorescent protein, LaG19, ...
Authors:Ketaren, N.E, Rout, M.P, Bonanno, J.B, Almo, S.C.
Deposit date:2023-04-11
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:High affinity nanobodies to GFP
To Be Published
3EK7
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BU of 3ek7 by Molmil
Calcium-saturated GCaMP2 dimer
Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
Authors:Akerboom, J, Velez Rivera, J.D, Looger, L.L, Schreiter, E.R.
Deposit date:2008-09-18
Release date:2008-12-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design
J.Biol.Chem., 284, 2009
1W7S
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BU of 1w7s by Molmil
Wild-Type Aequorea victoria Green Fluorescent Protein
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Van Thor, J.J, Georgiev, G.Y, Towrie, M, Sage, J.T.
Deposit date:2004-09-09
Release date:2005-07-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ultrafast and Low Barrier Motions in the Photoreactions of the Green Fluorescent Protein
J.Biol.Chem., 280, 2005
5DPG
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BU of 5dpg by Molmil
sfGFP mutant - 133 p-cyano-L-phenylalanine
Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, SODIUM ION
Authors:Dippel, A.B, Olenginski, G.M, Maurici, N, Liskov, M.T, Brewer, S.H, Phillips-Piro, C.M.
Deposit date:2015-09-12
Release date:2016-01-13
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Probing the effectiveness of spectroscopic reporter unnatural amino acids: a structural study.
Acta Crystallogr D Struct Biol, 72, 2016
1W7T
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BU of 1w7t by Molmil
Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein at 100 K
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Van Thor, J.J, Georgiev, G.Y, Towrie, M, Sage, J.T.
Deposit date:2004-09-09
Release date:2005-07-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Ultrafast and Low Barrier Motions in the Photoreactions of the Green Fluorescent Protein
J.Biol.Chem., 280, 2005
3UFZ
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BU of 3ufz by Molmil
Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code
Descriptor: Green fluorescent protein
Authors:Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
Deposit date:2011-11-02
Release date:2012-10-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012

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