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PDB: 59 results

2BQ1
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BU of 2bq1 by Molmil
Ribonucleotide reductase class 1b holocomplex R1E,R2F from Salmonella typhimurium
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, FE (III) ION, MAGNESIUM ION, ...
Authors:Uppsten, M, Farnegardh, M, Domkin, V, Uhlin, U.
Deposit date:2005-04-26
Release date:2006-05-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.99 Å)
Cite:The First Holocomplex Structure of Ribonucleotide Reductase Gives New Insight Into its Mechanism of Action
J.Mol.Biol., 359, 2006
6CGN
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BU of 6cgn by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit dAMP-bound (pH 7)
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, PHOSPHATE ION, ...
Authors:Maggiolo, A.O, Boal, A.K.
Deposit date:2018-02-20
Release date:2018-05-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:An endogenous dAMP ligand inBacillus subtilisclass Ib RNR promotes assembly of a noncanonical dimer for regulation by dATP.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6CGM
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BU of 6cgm by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit (nucleotide free)
Descriptor: 1,2-ETHANEDIOL, Ribonucleoside-diphosphate reductase
Authors:Maggiolo, A.O, Boal, A.K.
Deposit date:2018-02-20
Release date:2018-05-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:An endogenous dAMP ligand inBacillus subtilisclass Ib RNR promotes assembly of a noncanonical dimer for regulation by dATP.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6CGL
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BU of 6cgl by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit dAMP-bound as-isolated (pH 4)
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, Ribonucleoside-diphosphate reductase, SULFATE ION
Authors:Maggiolo, A.O, Boal, A.K.
Deposit date:2018-02-20
Release date:2018-05-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:An endogenous dAMP ligand inBacillus subtilisclass Ib RNR promotes assembly of a noncanonical dimer for regulation by dATP.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1PEO
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BU of 1peo by Molmil
Ribonucleotide Reductase Protein R1E from Salmonella typhimurium
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase 2 alpha chain
Authors:Uppsten, M, Farnegardh, M, Jordan, A, Eliasson, R, Eklund, H, Uhlin, U.
Deposit date:2003-05-22
Release date:2004-05-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.
J.Mol.Biol., 330, 2003
1PEM
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BU of 1pem by Molmil
Ribonucleotide Reductase Protein R1E from Salmonella typhimurium
Descriptor: Ribonucleoside-diphosphate reductase 2 alpha chain
Authors:Uppsten, M, Farnegardh, M, Jordan, A, Eliasson, R, Eklund, H, Uhlin, U.
Deposit date:2003-05-22
Release date:2004-05-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.
J.Mol.Biol., 330, 2003
1PEQ
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BU of 1peq by Molmil
Ribonucleotide Reductase Protein R1E from Salmonella typhimurium
Descriptor: MAGNESIUM ION, Ribonucleoside-diphosphate reductase 2 alpha chain, THYMIDINE-5'-TRIPHOSPHATE
Authors:Uppsten, M, Farnegardh, M, Jordan, A, Eliasson, R, Eklund, H, Uhlin, U.
Deposit date:2003-05-22
Release date:2004-05-25
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.
J.Mol.Biol., 330, 2003
1PEU
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BU of 1peu by Molmil
Ribonucleotide Reductase Protein R1E from Salmonella typhimurium
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase 2 alpha chain
Authors:Uppsten, M, Farnegardh, M, Jordan, A, Eliasson, R, Eklund, H, Uhlin, U.
Deposit date:2003-05-22
Release date:2004-05-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.
J.Mol.Biol., 330, 2003
6MT9
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BU of 6mt9 by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
Deposit date:2018-10-19
Release date:2019-06-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MV9
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BU of 6mv9 by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase, ...
Authors:Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
Deposit date:2018-10-24
Release date:2019-06-19
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MYX
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BU of 6myx by Molmil
EM structure of Bacillus subtilis ribonucleotide reductase inhibited double-helical filament of NrdE alpha subunit with dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Ribonucleoside-diphosphate reductase
Authors:Thomas, W.C, Bacik, J.P, Chen, J.Z, Ando, N.
Deposit date:2018-11-02
Release date:2019-06-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MW3
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BU of 6mw3 by Molmil
EM structure of Bacillus subtilis ribonucleotide reductase inhibited filament composed of NrdE alpha subunit and NrdF beta subunit with dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Ribonucleoside-diphosphate reductase, Ribonucleoside-diphosphate reductase NrdF beta subunit
Authors:Thomas, W.C, Bacik, J.P, Kaelber, J.T, Ando, N.
Deposit date:2018-10-29
Release date:2019-06-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.65 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MVE
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BU of 6mve by Molmil
Reduced X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
Deposit date:2018-10-25
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
9BXS
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BU of 9bxs by Molmil
Consensus full-complex model for pre-reduction condition of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-22
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BY2
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BU of 9by2 by Molmil
Consensus full-complex model for product condition of Bacillus subtilis ribonucleotide reductase complex
Descriptor: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-23
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BZ5
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BU of 9bz5 by Molmil
Class 6 model for combined refinement of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-24
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.93 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BYG
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BU of 9byg by Molmil
Class 19 model for product condition of Bacillus subtilis ribonucleotide reductase complex
Descriptor: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-23
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BYH
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BU of 9byh by Molmil
Consensus model for turnover condition of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-23
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BYX
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BU of 9byx by Molmil
Class 8 model for turnover condition of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-24
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.94 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BZ6
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BU of 9bz6 by Molmil
Class 7 model for combined refinement of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-24
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BZJ
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BU of 9bzj by Molmil
Class 40 model for combined refinement of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-24
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BZ3
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BU of 9bz3 by Molmil
Class 17 model for turnover condition of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-24
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (4.01 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BYW
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BU of 9byw by Molmil
Class 5 model for turnover condition of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-24
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (4.64 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BZO
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BU of 9bzo by Molmil
Class 50 model for combined refinement of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-24
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (4.48 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025
9BX2
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BU of 9bx2 by Molmil
Class 2 model for preturnover condition of Bacillus subtilis ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Xu, D, Thomas, W.C, Burnim, A.A, Ando, N.
Deposit date:2024-05-22
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Conformational landscapes of a class I ribonucleotide reductase complex during turnover reveal intrinsic dynamics and asymmetry.
Nat Commun, 16, 2025

 

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