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PDB: 87 results

6WTB
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BU of 6wtb by Molmil
Sort-Tagged Drosophila Cryptochrome
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION
Authors:Schneps, C.M, Crane, B.R.
Deposit date:2020-05-02
Release date:2021-05-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Tuning flavin environment to detect and control light-induced conformational switching in Drosophila cryptochrome.
Commun Biol, 4, 2021
4MLP
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Mammalian cryptochrome in complex with a small molecule competitor of its ubiquitin ligase
Descriptor: Cryptochrome-2, N-[(2S)-3-(9H-carbazol-9-yl)-2-hydroxypropyl]-N-(furan-2-ylmethyl)methanesulfonamide
Authors:Nangle, S, Xing, W, Zheng, N.
Deposit date:2013-09-06
Release date:2013-10-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.943 Å)
Cite:Crystal structure of mammalian cryptochrome in complex with a small molecule competitor of its ubiquitin ligase.
Cell Res., 23, 2013
7QUT
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BU of 7qut by Molmil
serial synchrotron crystallographic structure of Drosophila Melanogaster (6-4) photolyase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, RE11660p
Authors:Cellini, A, Weixiao, Y.W, Kumar, M.S, Westenhoff, S.
Deposit date:2022-01-18
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structural basis of the radical pair state in photolyases and cryptochromes.
Chem.Commun.(Camb.), 58, 2022
3FY4
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BU of 3fy4 by Molmil
(6-4) Photolyase Crystal Structure
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-4 photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Hitomi, K, Arvai, A.S, Tainer, J.A, Getzoff, E.D.
Deposit date:2009-01-21
Release date:2009-04-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes.
Proc.Natl.Acad.Sci.USA, 106, 2009
5ZM0
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BU of 5zm0 by Molmil
X-ray structure of animal-like Cryptochrome from Chlamydomonas reinhardtii
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Cryptochrome photoreceptor, ...
Authors:Franz, S, Ignatz, E, Wenzel, S, Zielosko, H, Gusti Ngurah Putu, E.P, Maestre-Reyna, M, Tsai, M.-D, Yamamoto, J, Mittag, M, Essen, L.-O.
Deposit date:2018-03-31
Release date:2018-07-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii
Nucleic Acids Res., 46, 2018
6X24
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BU of 6x24 by Molmil
Structural basis of plant blue light photoreceptor
Descriptor: Cryptochrome-2, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
Authors:Palayam, M, Ganapathy, J, Guercio, M.A, Shabek, N.
Deposit date:2020-05-19
Release date:2020-12-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structural insights into photoactivation of plant Cryptochrome-2.
Commun Biol, 4, 2021
8P4X
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BU of 8p4x by Molmil
FAD_ox bound dark state structure of PdLCry
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, Putative light-receptive cryptochrome (Fragment)
Authors:Behrmann, E, Behrmann, H.
Deposit date:2023-05-23
Release date:2023-11-08
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:A marine cryptochrome with an inverse photo-oligomerization mechanism.
Nat Commun, 14, 2023
4GU5
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BU of 4gu5 by Molmil
Structure of Full-length Drosophila Cryptochrome
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION
Authors:Zoltowski, B.D, Vaidya, A.T, Top, D, Widom, J, Young, M.W, Levy, C, Jones, A.R, Scrutton, N.S, Leys, D, Crane, B.R.
Deposit date:2012-08-29
Release date:2012-09-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Updated structure of Drosophila cryptochrome.
Nature, 495, 2013
5T5X
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BU of 5t5x by Molmil
High resolution structure of mouse Cryptochrome 1
Descriptor: CHLORIDE ION, Cryptochrome-1
Authors:Michael, A.K, Tripathi, S, Partch, C.L.
Deposit date:2016-08-31
Release date:2017-02-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1DNP
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BU of 1dnp by Molmil
STRUCTURE OF DEOXYRIBODIPYRIMIDINE PHOTOLYASE
Descriptor: 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID, DNA PHOTOLYASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Park, H.-W, Sancar, A, Deisenhofer, J.
Deposit date:1995-07-03
Release date:1996-08-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of DNA photolyase from Escherichia coli.
Science, 268, 1995
4CT0
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BU of 4ct0 by Molmil
Crystal Structure of Mouse Cryptochrome1 in Complex with Period2
Descriptor: CHLORIDE ION, CRYPTOCHROME-1, HEXAETHYLENE GLYCOL, ...
Authors:Schmalen, I, Rajan Prabu, J, Benda, C, Wolf, E.
Deposit date:2014-03-11
Release date:2014-06-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Interaction of Circadian Clock Proteins Cry1 and Per2 is Modulated by Zinc Binding and Disulfide Bond Formation.
Cell(Cambridge,Mass.), 157, 2014
7X0Y
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BU of 7x0y by Molmil
Cryo-EM Structure of Arabidopsis CRY2 tetramer in complex with CIB1 fragment
Descriptor: CIB1 fragment, Cryptochrome-2, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hao, Y.H, Zhang, X, Zhang, P.
Deposit date:2022-02-22
Release date:2023-01-04
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.89 Å)
Cite:Cryo-EM structure of the CRY2 and CIB1 fragment complex provides insights into CIB1-mediated photosignaling.
Plant Commun., 4, 2023
7X0X
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BU of 7x0x by Molmil
Cryo-EM Structure of Arabidopsis CRY2 in active conformation
Descriptor: Cryptochrome-2, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Hao, Y.H, Zhang, X, Zhang, P.
Deposit date:2022-02-22
Release date:2023-01-04
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Cryo-EM structure of the CRY2 and CIB1 fragment complex provides insights into CIB1-mediated photosignaling.
Plant Commun., 4, 2023
2E0I
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BU of 2e0i by Molmil
Crystal structure of archaeal photolyase from Sulfolobus tokodaii with two FAD molecules: Implication of a novel light-harvesting cofactor
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 432aa long hypothetical deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Fujihashi, M, Numoto, N, Kobayashi, Y, Mizushima, A, Tsujimura, M, Nakamura, A, Kawarabayashi, Y, Miki, K.
Deposit date:2006-10-10
Release date:2006-11-28
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Archaeal Photolyase from Sulfolobus tokodaii with Two FAD Molecules: Implication of a Novel Light-harvesting Cofactor
J.Mol.Biol., 365, 2007
1IQR
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BU of 1iqr by Molmil
Crystal structure of DNA photolyase from Thermus thermophilus
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, photolyase
Authors:Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-07-27
Release date:2001-11-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism.
Proc.Natl.Acad.Sci.USA, 98, 2001
7D1C
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BU of 7d1c by Molmil
Crystal structure of mouse Cryptochrome 1 in complex with compound TH303
Descriptor: Cryptochrome-1, N-[2-(4-methoxyphenyl)-5,5-bis(oxidanylidene)-4,6-dihydrothieno[3,4-c]pyrazol-3-yl]-4-(phenylcarbonyl)benzamide
Authors:Miller, S.A, Hirota, T.
Deposit date:2020-09-14
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Photopharmacological Manipulation of Mammalian CRY1 for Regulation of the Circadian Clock.
J.Am.Chem.Soc., 143, 2021
7D19
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BU of 7d19 by Molmil
Crystal structure of mouse Cryptochrome 1 in complex with compound TH129
Descriptor: Cryptochrome-1, N-[2-(2,4-dimethylphenyl)-4,6-dihydrothieno[3,4-c]pyrazol-3-yl]-4-(phenylcarbonyl)benzamide
Authors:Miller, S.A, Hirota, T.
Deposit date:2020-09-14
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Photopharmacological Manipulation of Mammalian CRY1 for Regulation of the Circadian Clock.
J.Am.Chem.Soc., 143, 2021
7PUA
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BU of 7pua by Molmil
Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Descriptor: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
Authors:Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
Deposit date:2021-09-29
Release date:2022-03-02
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7AZT
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BU of 7azt by Molmil
X-ray crystallographic structure of (6-4)photolyase from Drosophila melanogaster at room temperature
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, RE11660p
Authors:Cellini, A, Wahlgren, W.Y, Henry, L, Westenhoff, S, Pandey, S.
Deposit date:2020-11-17
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature.
Acta Crystallogr D Struct Biol, 77, 2021
7AYV
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BU of 7ayv by Molmil
X-ray crystallographic structure of (6-4)photolyase from Drosophila melanogaster at cryogenic temperature
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, RE11660p, ...
Authors:Cellini, A, Wahlgren, W.Y, Henry, L, Westenhoff, S.
Deposit date:2020-11-13
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:The three-dimensional structure of Drosophila melanogaster (6-4) photolyase at room temperature.
Acta Crystallogr D Struct Biol, 77, 2021
7PUB
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BU of 7pub by Molmil
Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Descriptor: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
Authors:Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
Deposit date:2021-09-29
Release date:2022-05-04
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
2WQ6
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BU of 2wq6 by Molmil
Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(Dewar)C lesion
Descriptor: 5'-D(*AP*CP*AP*GP*CP*GP*GP*TDYP*CDWP*GP* CP*AP*AP*GP*T)-3', 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP* CP*GP*CP*TP*G)-3', FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Glas, A.F, Kaya, E, Schneider, S, Maul, M.J, Carell, T.
Deposit date:2009-08-14
Release date:2010-02-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:DNA (6-4) Photolyases Reduce Dewar Isomers for Isomerization Into (6-4) Lesions
J.Am.Chem.Soc., 132, 2010
4U8H
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BU of 4u8h by Molmil
Crystal Structure of Mammalian Period-Cryptochrome Complex
Descriptor: Cryptochrome-2, Period circadian protein homolog 2, ZINC ION
Authors:Nangle, S.N, Rosensweig, C, Koike, N, Tei, H, Takahashi, J.S, Green, C.B, Zheng, N.
Deposit date:2014-08-03
Release date:2014-10-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:Molecular assembly of the period-cryptochrome circadian transcriptional repressor complex.
Elife, 3, 2014
4U63
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BU of 4u63 by Molmil
Crystal structure of a bacterial class III photolyase from Agrobacterium tumefaciens at 1.67A resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID, DNA photolyase, ...
Authors:Scheerer, P, Zhang, F, Kalms, J, von Stetten, D, Krauss, N, Oberpichler, I, Lamparter, T.
Deposit date:2014-07-26
Release date:2015-03-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:The Class III Cyclobutane Pyrimidine Dimer Photolyase Structure Reveals a New Antenna Chromophore Binding Site and Alternative Photoreduction Pathways.
J.Biol.Chem., 290, 2015
2WQ7
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Structure of the 6-4 photolyase of D. melanogaster in complex with the non-natural N4-methyl T(6-4)C lesion
Descriptor: 5'-D(*AP*CP*AP*GP*CP*GP*GP*TDYP*ZP*GP* CP*AP*AP*GP*T)-3', 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP* CP*GP*CP*TP*G)-3', FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Glas, A.F, Kaya, E, Schneider, S, Maul, M.J, Carell, T.
Deposit date:2009-08-14
Release date:2010-02-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA (6-4) Photolyases Reduce Dewar Isomers for Isomerization Into (6-4) Lesions.
J.Am.Chem.Soc., 132, 2010

 

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