Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1491 results

8GLP
DownloadVisualize
BU of 8glp by Molmil
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Watson, Z.L, Altman, R.B, Blanchard, S.C.
Deposit date:2023-03-22
Release date:2023-04-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (1.67 Å)
Cite:mRNA decoding in human is kinetically and structurally distinct from bacteria.
Nature, 617, 2023
8G5Z
DownloadVisualize
BU of 8g5z by Molmil
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ...
Authors:Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C.
Deposit date:2023-02-14
Release date:2023-04-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:mRNA decoding in human is kinetically and structurally distinct from bacteria.
Nature, 617, 2023
8G6J
DownloadVisualize
BU of 8g6j by Molmil
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
Descriptor: (3R,6R,9S,12S,15S,18S,20R,24aR)-6-[(2S)-butan-2-yl]-3,12-bis[(1R)-1-hydroxy-2-methylpropyl]-8,9,11,17,18-pentamethyl-15-[(2S)-2-methylbutyl]hexadecahydropyrido[1,2-a][1,4,7,10,13,16,19]heptaazacyclohenicosine-1,4,7,10,13,16,19(21H)-heptone, (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 1,4-DIAMINOBUTANE, ...
Authors:Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C.
Deposit date:2023-02-15
Release date:2023-04-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:mRNA decoding in human is kinetically and structurally distinct from bacteria.
Nature, 617, 2023
8G5Y
DownloadVisualize
BU of 8g5y by Molmil
mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)
Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ...
Authors:Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C.
Deposit date:2023-02-14
Release date:2023-04-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.29 Å)
Cite:mRNA decoding in human is kinetically and structurally distinct from bacteria.
Nature, 617, 2023
8GHU
DownloadVisualize
BU of 8ghu by Molmil
Methyltransferase RmtC bound to the 30S ribosomal subunit
Descriptor: 16S rRNA, 16S rRNA (guanine(1405)-N(7))-methyltransferase, 30S ribosomal protein S12, ...
Authors:Srinivas, P, Conn, G.L, Dunham, C.M.
Deposit date:2023-03-12
Release date:2023-04-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3 Å)
Cite:30S subunit recognition and G1405 modification by the aminoglycoside-resistance 16S ribosomal RNA methyltransferase RmtC.
Biorxiv, 2023
8G60
DownloadVisualize
BU of 8g60 by Molmil
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ...
Authors:Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C.
Deposit date:2023-02-14
Release date:2023-04-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:mRNA decoding in human is kinetically and structurally distinct from bacteria.
Nature, 617, 2023
6ERI
DownloadVisualize
BU of 6eri by Molmil
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10 alpha, ...
Authors:Perez Borema, A, Aibara, S, Paul, B, Tobiasson, V, Kimanius, D, Forsberg, B.O, Wallden, K, Lindahl, E, Amunts, A.
Deposit date:2017-10-18
Release date:2018-04-18
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.
Nat Plants, 4, 2018
8G61
DownloadVisualize
BU of 8g61 by Molmil
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ...
Authors:Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C.
Deposit date:2023-02-14
Release date:2023-04-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:mRNA decoding in human is kinetically and structurally distinct from bacteria.
Nature, 617, 2023
8JIW
DownloadVisualize
BU of 8jiw by Molmil
Atomic structure of wheat ribosome reveals unique features of the plant ribosomes
Descriptor: 18S rRNA, 30S ribosomal protein S4, chloroplastic, ...
Authors:Mishra, R.K, Sharma, P, Hussain, T.
Deposit date:2023-05-28
Release date:2024-03-27
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes.
Structure, 32, 2024
6EML
DownloadVisualize
BU of 6eml by Molmil
Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
Descriptor: 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ...
Authors:Heuer, A, Thomson, E, Schmidt, C, Berninghausen, O, Becker, T, Hurt, E, Beckmann, R.
Deposit date:2017-10-02
Release date:2017-11-29
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of a late pre-40S ribosomal subunit fromSaccharomyces cerevisiae.
Elife, 6, 2017
6ENF
DownloadVisualize
BU of 6enf by Molmil
Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Huter, P, Arenz, S, Wilson, D.N.
Deposit date:2017-10-04
Release date:2017-11-22
Last modified:2018-01-31
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P.
Mol. Cell, 68, 2017
8G4S
DownloadVisualize
BU of 8g4s by Molmil
40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
Descriptor: 18S rRNA, 40S ribosomal protein S21, 40S ribosomal protein S25, ...
Authors:Eiler, D.R, Wimberly, B.T, Bilodeau, D.Y, Rissland, O.S, Kieft, J.S.
Deposit date:2023-02-10
Release date:2024-01-31
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:The Giardia lamblia ribosome structure reveals divergence in several biological pathways and the mode of emetine function.
Structure, 32, 2024
8G7Q
DownloadVisualize
BU of 8g7q by Molmil
Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Rybak, M.Y, Gagnon, M.G.
Deposit date:2023-02-16
Release date:2024-03-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance.
Nat.Struct.Mol.Biol., 31, 2024
6FAI
DownloadVisualize
BU of 6fai by Molmil
Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
Descriptor: 20S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Scaiola, A, Pena, C, Weisser, M, Boehringer, D, Leibundgut, M, Klingauf-Nerurkar, P, Gerhardy, S, Panse, V.G, Ban, N.
Deposit date:2017-12-15
Release date:2018-02-28
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit.
EMBO J., 37, 2018
8G7R
DownloadVisualize
BU of 8g7r by Molmil
Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Rybak, M.Y, Gagnon, M.G.
Deposit date:2023-02-16
Release date:2024-03-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance.
Nat.Struct.Mol.Biol., 31, 2024
8G7P
DownloadVisualize
BU of 8g7p by Molmil
Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Rybak, M.Y, Gagnon, M.G.
Deposit date:2023-02-16
Release date:2024-03-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance.
Nat.Struct.Mol.Biol., 31, 2024
8G7S
DownloadVisualize
BU of 8g7s by Molmil
Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Rybak, M.Y, Gagnon, M.G.
Deposit date:2023-02-16
Release date:2024-03-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance.
Nat.Struct.Mol.Biol., 31, 2024
8OM2
DownloadVisualize
BU of 8om2 by Molmil
Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.
Descriptor: 15S mitochondrial rRNA, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial, ...
Authors:Itoh, Y, Chicherin, I, Kamenski, P, Amunts, A.
Deposit date:2023-03-31
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:METTL17 is an Fe-S cluster checkpoint for mitochondrial translation.
Mol.Cell, 84, 2024
8OM4
DownloadVisualize
BU of 8om4 by Molmil
Small subunit of yeast mitochondrial ribosome.
Descriptor: 15S mitochondrial rRNA, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial, ...
Authors:Itoh, Y, Chicherin, I, Kamenski, P, Amunts, A.
Deposit date:2023-03-31
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.32 Å)
Cite:METTL17 is an Fe-S cluster checkpoint for mitochondrial translation.
Mol.Cell, 84, 2024
8OM3
DownloadVisualize
BU of 8om3 by Molmil
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23.
Descriptor: 15S mitochondrial rRNA, 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial, ...
Authors:Itoh, Y, Chicherin, I, Kamenski, P, Amunts, A.
Deposit date:2023-03-31
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:METTL17 is an Fe-S cluster checkpoint for mitochondrial translation.
Mol.Cell, 84, 2024
8JSH
DownloadVisualize
BU of 8jsh by Molmil
Structure of the 30S-body-IF3 complex from Escherichia coli
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S15, 30S ribosomal protein S16, ...
Authors:Uday, A.B, Mishra, R.K, Hussain, T.
Deposit date:2023-06-20
Release date:2024-01-24
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Initiation factor 3 bound to the 30S ribosomal subunit in an initial step of translation.
Proteins, 2023
8JSG
DownloadVisualize
BU of 8jsg by Molmil
Structure of the 30S-IF3 complex from Escherichia coli
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S16, Small ribosomal subunit protein bS18, ...
Authors:Uday, A.B, Mishra, R.K, Hussain, T.
Deposit date:2023-06-20
Release date:2024-02-21
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Initiation factor 3 bound to the 30S ribosomal subunit in an initial step of translation.
Proteins, 2023
7UG7
DownloadVisualize
BU of 7ug7 by Molmil
70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B
Descriptor: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
Authors:Rundlet, E.J, Wieland, M, Holm, M, Koller, T.O, Blanchard, S.C, Wilson, D.N.
Deposit date:2022-03-24
Release date:2022-05-18
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:The cyclic octapeptide antibiotic argyrin B inhibits translation by trapping EF-G on the ribosome during translocation.
Proc.Natl.Acad.Sci.USA, 119, 2022
7UCJ
DownloadVisualize
BU of 7ucj by Molmil
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Descriptor: 18S rRNA, 28s rRNA, 40S ribosomal protein S10, ...
Authors:Yang, R, Arango, D, Sturgill, D, Oberdoerffer, S.
Deposit date:2022-03-16
Release date:2022-06-01
Last modified:2022-08-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine.
Mol.Cell, 82, 2022
7UCK
DownloadVisualize
BU of 7uck by Molmil
80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
Descriptor: 18S rRNA, 28s rRNA, 40S ribosomal protein S10, ...
Authors:Yang, R, Arango, D, Sturgill, D, Oberdoerffer, S.
Deposit date:2022-03-16
Release date:2022-06-01
Last modified:2022-08-17
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine.
Mol.Cell, 82, 2022

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon