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PDB: 1667 results

2WWZ
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BU of 2wwz by Molmil
TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked di-ubiquitin, P212121
Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION
Authors:Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D.
Deposit date:2009-10-30
Release date:2009-11-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain
Nat.Struct.Mol.Biol., 16, 2009
2WYQ
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BU of 2wyq by Molmil
THE CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE (UBL) DOMAIN OF HHR23A (HUMAN HOMOLOGUE A OF RAD23)
Descriptor: SULFATE ION, UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A
Authors:Chen, Y.W.
Deposit date:2009-11-19
Release date:2010-11-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.651 Å)
Cite:The Crystal Structure of the Ubiquitin-Like (Ubl) Domain of Human Homologue a of Rad23 (Hhr23A) Protein
Protein Eng.Des.Sel., 24, 2011
1L2N
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BU of 1l2n by Molmil
Smt3 Solution Structure
Descriptor: Ubiquitin-like protein SMT3
Authors:Sheng, W, Liao, X.
Deposit date:2002-02-22
Release date:2002-03-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a yeast ubiquitin-like protein Smt3: the role of structurally less defined sequences in protein-protein recognitions.
Protein Sci., 11, 2002
5J8P
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BU of 5j8p by Molmil
Lys27-linked diubiquitin
Descriptor: D-ubiquitin, MAGNESIUM ION, ubiquitin
Authors:Pan, M, Gao, S, Zheng, Y.
Deposit date:2016-04-08
Release date:2016-05-18
Last modified:2022-02-09
Method:X-RAY DIFFRACTION (1.554 Å)
Cite:Structure of Lys27-linked diubiquitin
To Be Published
1J8C
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BU of 1j8c by Molmil
Solution Structure of the Ubiquitin-like Domain of hPLIC-2
Descriptor: ubiquitin-like protein hPLIC-2
Authors:Walters, K.J, Kleijnen, M.F, Goh, A.M, Wagner, G, Howley, P.M.
Deposit date:2001-05-21
Release date:2002-03-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural studies of the interaction between ubiquitin family proteins and proteasome subunit S5a.
Biochemistry, 41, 2002
1IYF
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BU of 1iyf by Molmil
Solution structure of ubiquitin-like domain of human parkin
Descriptor: parkin
Authors:Sakata, E, Yamaguchi, Y, Kurimoto, E, Kikuchi, J, Yokoyama, S, Kawahara, H, Yokosawa, H, Hattori, N, Mizuno, Y, Tanaka, K, Kato, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-08-13
Release date:2003-03-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain
EMBO REP., 4, 2003
4XYZ
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BU of 4xyz by Molmil
Crystal structure of K33 linked di-Ubiquitin
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, IODIDE ION, ...
Authors:Kristariyanto, Y.A, Abdul Rehman, S.A, Choi, S.Y, Ritorto, S, Campbell, D.G, Morrice, N.A, Toth, R, Kulathu, Y.
Deposit date:2015-02-03
Release date:2015-03-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Assembly and structure of Lys33-linked polyubiquitin reveals distinct conformations.
Biochem.J., 467, 2015
4XOL
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BU of 4xol by Molmil
Observing the overall rocking motion of a protein in a crystal - Cubic Ubiquitin crystals.
Descriptor: Ubiquitin, ZINC ION
Authors:Coquelle, N, Peixiang, M, Schanda, P, Colletier, J.P.
Deposit date:2015-01-16
Release date:2015-10-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Observing the overall rocking motion of a protein in a crystal.
Nat Commun, 6, 2015
4XOF
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BU of 4xof by Molmil
Observing the overall rocking motion of a protein in a crystal - Orthorhombic Ubiquitin crystals without Zinc.
Descriptor: Ubiquitin
Authors:Coquelle, N, Ma, P, Schanda, P, Colletier, J.P.
Deposit date:2015-01-16
Release date:2015-10-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Observing the overall rocking motion of a protein in a crystal.
Nat Commun, 6, 2015
6OQ2
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BU of 6oq2 by Molmil
NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin
Descriptor: Ubiquitin
Authors:Boughton, A.J, Fushman, D.
Deposit date:2019-04-25
Release date:2019-10-23
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1.
Structure, 28, 2020
4DWF
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BU of 4dwf by Molmil
Crystal structure of a HLA-B associated transcript 3 (BAT3) from Homo sapiens at 1.80 A resolution
Descriptor: HLA-B-associated transcript 3, SULFATE ION
Authors:Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL)
Deposit date:2012-02-24
Release date:2012-03-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a HLA-B associated transcript 3 (BAT3) from Homo sapiens at 1.80 A resolution
To be published
6FJ7
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BU of 6fj7 by Molmil
Caldiarchaeum Subterraneum Ubiquitin
Descriptor: SULFATE ION, Ubiquitin-like protein
Authors:Wojtynek, M, Martin, J, Hartmann, M.D.
Deposit date:2018-01-21
Release date:2018-07-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Rpn11-mediated ubiquitin processing in an ancestral archaeal ubiquitination system.
Nat Commun, 9, 2018
2RU6
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BU of 2ru6 by Molmil
The pure alternative state of ubiquitin
Descriptor: Ubiquitin
Authors:Kitazawa, S, Kameda, T, Kumo, A, Utsumi, M, Baxter, N, Kato, K, Williamson, M.P, Kitahara, R.
Deposit date:2013-12-04
Release date:2014-02-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Close Identity between Alternatively Folded State N2 of Ubiquitin and the Conformation of the Protein Bound to the Ubiquitin-Activating Enzyme
Biochemistry, 53, 2014
2RSU
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BU of 2rsu by Molmil
Alternative structure of Ubiquitin
Descriptor: Ubiquitin
Authors:Kitazawa, S, Kameda, T, Yagi-Utsumi, M, Kato, K, Kitahara, R.
Deposit date:2012-06-15
Release date:2013-03-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Structure of the Q41N Variant of Ubiquitin as a Model for the Alternatively Folded N2 State of Ubiquitin
Biochemistry, 52, 2013
2W9N
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BU of 2w9n by Molmil
crystal structure of linear di-ubiquitin
Descriptor: CHLORIDE ION, UBIQUITIN, ZINC ION
Authors:Komander, D, Reyes-Turcu, F, Wilkinson, K.D, Barford, D.
Deposit date:2009-01-27
Release date:2009-04-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular Discrimination of Structurally Equivalent Lys 63-Linked and Linear Polyubiquitin Chains.
Embo Rep., 10, 2009
1D3Z
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BU of 1d3z by Molmil
UBIQUITIN NMR STRUCTURE
Descriptor: PROTEIN (UBIQUITIN)
Authors:Cornilescu, G, Marquardt, J.L, Ottiger, M, Bax, A.
Deposit date:1999-10-01
Release date:1999-10-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase
J.Am.Chem.Soc., 120, 1998
7P08
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BU of 7p08 by Molmil
Solution structure of the human SF3A1 ubiquitin-like domain
Descriptor: Isoform 1 of Splicing factor 3A subunit 1
Authors:de Vries, T, Campagne, S, Allain, F.H.T.
Deposit date:2021-06-29
Release date:2022-02-09
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Sequence-specific RNA recognition by an RGG motif connects U1 and U2 snRNP for spliceosome assembly.
Proc.Natl.Acad.Sci.USA, 119, 2022
3ZLZ
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BU of 3zlz by Molmil
Lys6-linked tri-ubiquitin
Descriptor: UBIQUITIN, ZINC ION
Authors:Hospenthal, M.K, Freund, S.M.V, Komander, D.
Deposit date:2013-02-04
Release date:2013-04-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Assembly, Analysis and Architecture of Atypical Ubiquitin Chains
Nat.Struct.Mol.Biol., 20, 2013
1F9J
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BU of 1f9j by Molmil
STRUCTURE OF A NEW CRYSTAL FORM OF TETRAUBIQUITIN
Descriptor: TETRAUBIQUITIN
Authors:Phillips, C.L, Thrower, J, Pickart, C.M, Hill, C.P.
Deposit date:2000-07-10
Release date:2001-02-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a new crystal form of tetraubiquitin.
Acta Crystallogr.,Sect.D, 57, 2001
1G6J
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BU of 1g6j by Molmil
STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSE MICELLES
Descriptor: UBIQUITIN
Authors:Babu, C.R, Flynn, P.F, Wand, A.J.
Deposit date:2000-11-06
Release date:2001-03-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Validation of protein structure from preparations of encapsulated proteins dissolved in low viscosity fluids.
J.Am.Chem.Soc., 123, 2001
1GJZ
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BU of 1gjz by Molmil
Solution structure of a dimeric N-terminal fragment of human ubiquitin
Descriptor: UBIQUITIN
Authors:Bolton, D, Evans, P.A, Stott, K, Broadhurst, R.W.
Deposit date:2001-08-06
Release date:2001-12-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and Properties of a Dimeric N-Terminal Fragment of Human Ubiquitin.
J.Mol.Biol., 314, 2001
8YSY
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BU of 8ysy by Molmil
Ubiquitin(native) from Oryza sativa subsp. japonica (Rice)
Descriptor: Ubiquitin
Authors:Adhada, S.T, Sarma, S.P.
Deposit date:2024-03-24
Release date:2024-10-09
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Slow Conformational Exchange between Partially Folded and Near-Native States of Ubiquitin: Evidence for a Multistate Folding Model.
Biochemistry, 63, 2024
8YUM
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BU of 8yum by Molmil
Ubiquitin(late folding intermediate, F') from Oryza sativa subsp. japonica (Rice)
Descriptor: Ubiquitin
Authors:Adhada, S.T, Sarma, S.P.
Deposit date:2024-03-27
Release date:2024-10-09
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Slow Conformational Exchange between Partially Folded and Near-Native States of Ubiquitin: Evidence for a Multistate Folding Model.
Biochemistry, 63, 2024
2K39
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BU of 2k39 by Molmil
Recognition dynamics up to microseconds revealed from RDC derived ubiquitin ensemble in solution
Descriptor: Ubiquitin
Authors:Lange, O.F, Lakomek, N.A, Fares, C, Schroder, G, Walter, K, Becker, S, Meiler, J, Grubmuller, H, Griesinger, C, de Groot, B.L.
Deposit date:2008-04-25
Release date:2008-06-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution.
Science, 320, 2008
2JZZ
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BU of 2jzz by Molmil
Solid-State NMR Structure of Microcrystalline Ubiquitin
Descriptor: Ubiquitin
Authors:Manolikas, T, Herrmann, T, Meier, B.H.
Deposit date:2008-01-22
Release date:2008-03-25
Last modified:2024-05-08
Method:SOLID-STATE NMR
Cite:Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy.
J.Am.Chem.Soc., 130, 2008

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