5X3O
 
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5OHM
 | | K33-specific affimer bound to K33 diUb | | Descriptor: | K33-specific affimer, POLYETHYLENE GLYCOL (N=34), Polyubiquitin-C | | Authors: | Michel, M.A, Komander, D. | | Deposit date: | 2017-07-17 | | Release date: | 2017-10-04 | | Last modified: | 2024-01-17 | | Method: | X-RAY DIFFRACTION (3.8 Å) | | Cite: | Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling.
Mol. Cell, 68, 2017
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6KNA
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4UN2
 | | Crystal structure of the UBA domain of Dsk2 in complex with Ubiquitin | | Descriptor: | UBIQUITIN, UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2 | | Authors: | Michielssens, S, Peters, J.H, Ban, D, Pratihar, S, Seeliger, D, Sharma, M, Giller, K, Sabo, T.M, Becker, S, Lee, D, Griesinger, C, de Groot, B.L. | | Deposit date: | 2014-05-23 | | Release date: | 2014-08-27 | | Last modified: | 2024-01-10 | | Method: | X-RAY DIFFRACTION (1.51 Å) | | Cite: | A Designed Conformational Shift to Control Protein Binding Specificity.
Angew.Chem.Int.Ed.Engl., 53, 2014
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4GOC
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6KOX
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5OXI
 | | C-terminally retracted ubiquitin L67S mutant | | Descriptor: | SULFATE ION, Ubiquitin L67S mutant | | Authors: | Gladkova, C.G, Schubert, A.F, Wagstaff, J.L, Pruneda, J.N, Freund, S.M.V, Komander, D. | | Deposit date: | 2017-09-06 | | Release date: | 2017-11-22 | | Last modified: | 2024-01-17 | | Method: | X-RAY DIFFRACTION (1.63 Å) | | Cite: | An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1.
EMBO J., 36, 2017
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5OXH
 | | C-terminally retracted ubiquitin T66V/L67N mutant | | Descriptor: | SULFATE ION, Ubiquitin T66V/L67N mutant | | Authors: | Gladkova, C, Schubert, A.F, Wagstaff, J.L, Pruneda, J.P, Freund, S.M.V, Komander, D. | | Deposit date: | 2017-09-06 | | Release date: | 2017-11-22 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (1.601 Å) | | Cite: | An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1.
EMBO J., 36, 2017
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4GSW
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6E2B
 | | Ubiquitin in complex with Pt(2-phenilpyridine)(PPh3) | | Descriptor: | GLYCEROL, SULFATE ION, Ubiquitin, ... | | Authors: | Zhemkov, V.A, Kim, M. | | Deposit date: | 2018-07-11 | | Release date: | 2018-11-14 | | Last modified: | 2023-10-11 | | Method: | X-RAY DIFFRACTION (1.45 Å) | | Cite: | Reactions of Cyclometalated Platinum(II) [Pt(N∧C)(PR3)Cl] Complexes with Imidazole and Imidazole-Containing Biomolecules: Fine-Tuning of Reactivity and Photophysical Properties via Ligand Design.
Inorg Chem, 58, 2019
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4HK2
 | | U7Ub25.2540 | | Descriptor: | SULFATE ION, Ubiquitin | | Authors: | Murray, J.M, Rouge, L. | | Deposit date: | 2012-10-14 | | Release date: | 2012-11-21 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization
to be published
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6KOW
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4WZP
 | | Ser65 phosphorylated ubiquitin, major conformation | | Descriptor: | SULFATE ION, ubiquitin | | Authors: | Wauer, T, Wagstaff, J, Freund, S.M.V, Komander, D. | | Deposit date: | 2014-11-20 | | Release date: | 2015-01-14 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis.
Embo J., 34, 2015
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4XKL
 | | Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin | | Descriptor: | ACETATE ION, Calcium-binding and coiled-coil domain-containing protein 2, GLYCEROL, ... | | Authors: | Xie, X, Li, F, Wang, Y, Lin, Z, Chen, X, Liu, J, Pan, L. | | Deposit date: | 2015-01-12 | | Release date: | 2015-11-11 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Molecular basis of ubiquitin recognition by the autophagy receptor CALCOCO2
Autophagy, 11, 2015
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4XOK
 | | Observing the overall rocking motion of a protein in a crystal. | | Descriptor: | Ubiquitin, ZINC ION | | Authors: | Coquelle, N, Ma, P, Schanda, P, Colletier, J.P. | | Deposit date: | 2015-01-16 | | Release date: | 2015-10-14 | | Last modified: | 2024-01-10 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Observing the overall rocking motion of a protein in a crystal.
Nat Commun, 6, 2015
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4Y1H
 | | Crystal structure of K33 linked tri-Ubiquitin | | Descriptor: | 1,2-ETHANEDIOL, Ubiquitin-40S ribosomal protein S27a | | Authors: | Kristariyanto, Y.A, Abdul Rehman, S.A, Choi, S.Y, Ritorto, S, Campbell, D.G, Morrice, N.A, Toth, R, Kulathu, Y. | | Deposit date: | 2015-02-07 | | Release date: | 2015-03-18 | | Last modified: | 2024-01-10 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Assembly and structure of Lys33-linked polyubiquitin reveals distinct conformations.
Biochem.J., 467, 2015
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4XKH
 | | CRYSTAL STRUCTURE OF THE AIRAPL TANDEM UIMS IN COMPLEX WITH A LYS48-LINKED TRI-UBIQUITIN | | Descriptor: | AN1-type zinc finger protein 2B, Polyubiquitin-C | | Authors: | Rahighi, S, Kawasaki, M, Stanhill, A, Wakatsuki, S. | | Deposit date: | 2015-01-11 | | Release date: | 2016-02-17 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains.
Structure, 24, 2016
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1D3Z
 | | UBIQUITIN NMR STRUCTURE | | Descriptor: | PROTEIN (UBIQUITIN) | | Authors: | Cornilescu, G, Marquardt, J.L, Ottiger, M, Bax, A. | | Deposit date: | 1999-10-01 | | Release date: | 1999-10-14 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase
J.Am.Chem.Soc., 120, 1998
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1C3T
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1BT0
 | | STRUCTURE OF UBIQUITIN-LIKE PROTEIN, RUB1 | | Descriptor: | 1,2-ETHANEDIOL, PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1), ... | | Authors: | Delacruz, W.P, Fisher, A.J. | | Deposit date: | 1998-09-02 | | Release date: | 1998-12-30 | | Last modified: | 2023-08-09 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | The rub family of ubiquitin-like proteins. Crystal structure of Arabidopsis rub1 and expression of multiple rubs in Arabidopsis.
J.Biol.Chem., 273, 1998
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4DWF
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1F9J
 | | STRUCTURE OF A NEW CRYSTAL FORM OF TETRAUBIQUITIN | | Descriptor: | TETRAUBIQUITIN | | Authors: | Phillips, C.L, Thrower, J, Pickart, C.M, Hill, C.P. | | Deposit date: | 2000-07-10 | | Release date: | 2001-02-07 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structure of a new crystal form of tetraubiquitin.
Acta Crystallogr.,Sect.D, 57, 2001
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1IYF
 | | Solution structure of ubiquitin-like domain of human parkin | | Descriptor: | parkin | | Authors: | Sakata, E, Yamaguchi, Y, Kurimoto, E, Kikuchi, J, Yokoyama, S, Kawahara, H, Yokosawa, H, Hattori, N, Mizuno, Y, Tanaka, K, Kato, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2002-08-13 | | Release date: | 2003-03-25 | | Last modified: | 2023-12-27 | | Method: | SOLUTION NMR | | Cite: | Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain
EMBO REP., 4, 2003
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1GJZ
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1G6J
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