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PDB: 36 results

4WHS
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BU of 4whs by Molmil
4-fluorocatechol bound to Protocatechuate 3,4-dioxygenase (pseudomonas putida) at pH 8.5
Descriptor: 4-fluorobenzene-1,2-diol, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Knoot, C.J, Purpero, V.M, Lipscomb, J.D.
Deposit date:2014-09-23
Release date:2014-12-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase.
Proc.Natl.Acad.Sci.USA, 112, 2015
3T63
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BU of 3t63 by Molmil
Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
Descriptor: BETA-MERCAPTOETHANOL, FE (III) ION, GLYCEROL, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2011-07-28
Release date:2012-08-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
To be Published
4WHP
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BU of 4whp by Molmil
Resting Protocatechuate 3,4-dioxygenase (pseudomonas putida) at pH 6.5
Descriptor: BETA-MERCAPTOETHANOL, BICARBONATE ION, FE (III) ION, ...
Authors:Knoot, C.J, Lipscomb, J.D.
Deposit date:2014-09-23
Release date:2014-12-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.541 Å)
Cite:Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase.
Proc.Natl.Acad.Sci.USA, 112, 2015
4WHR
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BU of 4whr by Molmil
Anhydride reaction intermediate trapped in Protocatechuate 3,4-dioxygenase (pseudomonas putida) at pH 8.5
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-fluorobenzene-1,2-diol, 4-fluorooxepine-2,7-dione, ...
Authors:Knoot, C.J, Lipscomb, J.D.
Deposit date:2014-09-23
Release date:2014-12-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase.
Proc.Natl.Acad.Sci.USA, 112, 2015
3MV4
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BU of 3mv4 by Molmil
Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
Descriptor: BETA-MERCAPTOETHANOL, CARBONATE ION, FE (III) ION, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2010-05-03
Release date:2011-06-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
To be Published
3LKT
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BU of 3lkt by Molmil
Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Lipscomb, J.D, Purpero, V.M.
Deposit date:2010-01-27
Release date:2011-02-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
To be Published
3T67
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BU of 3t67 by Molmil
Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
Descriptor: CATECHOL, FE (III) ION, GLYCEROL, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2011-07-28
Release date:2012-08-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
To be Published
3MI1
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BU of 3mi1 by Molmil
Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, FE (III) ION, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2010-04-09
Release date:2011-04-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
To be Published
4WHQ
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BU of 4whq by Molmil
Alkylperoxo reaction intermediate trapped in Protocatechuate 3,4-dioxygenase (pseudomonas putida) at pH 6.5
Descriptor: (6S)-4-fluoro-6-hydroperoxy-6-hydroxycyclohexa-2,4-dien-1-one, 4-fluorobenzene-1,2-diol, BETA-MERCAPTOETHANOL, ...
Authors:Knoot, C.J, Purpero, V.M, Lipscomb, J.D.
Deposit date:2014-09-23
Release date:2014-12-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase.
Proc.Natl.Acad.Sci.USA, 112, 2015
3MFL
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BU of 3mfl by Molmil
Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
Descriptor: 2-(3,4-DIHYDROXYPHENYL)ACETIC ACID, BETA-MERCAPTOETHANOL, CARBONATE ION, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2010-04-02
Release date:2011-04-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
To be Published
3MI5
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BU of 3mi5 by Molmil
Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
Descriptor: BETA-MERCAPTOETHANOL, CATECHOL, CHLORIDE ION, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2010-04-09
Release date:2011-04-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
To be Published
4WHO
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BU of 4who by Molmil
Resting Protocatechuate 3,4-dioxygenase (pseudomonas putida) at pH 8.5
Descriptor: BETA-MERCAPTOETHANOL, BICARBONATE ION, FE (III) ION, ...
Authors:Knoot, C.J, Lipscomb, J.D.
Deposit date:2014-09-23
Release date:2014-12-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase.
Proc.Natl.Acad.Sci.USA, 112, 2015
3MV6
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BU of 3mv6 by Molmil
Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
Descriptor: 3,4-DIHYDROXYBENZOIC ACID, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2010-05-03
Release date:2011-06-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
To be Published
3LXV
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BU of 3lxv by Molmil
Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-NITROCATECHOL, BETA-MERCAPTOETHANOL, ...
Authors:Purpero, V.M, Lipscomb, J.D.
Deposit date:2010-02-25
Release date:2011-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
To be Published, 2010
3PCG
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BU of 3pcg by Molmil
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH THE INHIBITOR 4-HYDROXYPHENYLACETATE
Descriptor: 4-HYDROXYPHENYLACETATE, BETA-MERCAPTOETHANOL, FE (III) ION, ...
Authors:Elango, N, Orville, A.M, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-04-29
Release date:1998-04-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
Biochemistry, 36, 1997
3PCC
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BU of 3pcc by Molmil
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 4-HYDROXYBENZOATE
Descriptor: BETA-MERCAPTOETHANOL, FE (III) ION, P-HYDROXYBENZOIC ACID, ...
Authors:Elango, N, Orville, A.M, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-04-29
Release date:1998-04-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
Biochemistry, 36, 1997
3PCH
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BU of 3pch by Molmil
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 3-CHLORO-4-HYDROXYBENZOATE
Descriptor: 3-CHLORO-4-HYDROXYBENZOIC ACID, BETA-MERCAPTOETHANOL, FE (III) ION, ...
Authors:Orville, A.M, Elango, N, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-07-01
Release date:1998-01-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
Biochemistry, 36, 1997
1YKK
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BU of 1ykk by Molmil
Protocatechuate 3,4-Dioxygenase Y408C Mutant
Descriptor: FE (III) ION, Protocatechuate 3,4-dioxygenase alpha chain, Protocatechuate 3,4-dioxygenase beta chain
Authors:Brown, C.K, Ohlendorf, D.H.
Deposit date:2005-01-18
Release date:2005-08-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis
Biochemistry, 44, 2005
1YKN
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BU of 1ykn by Molmil
Protocatechuate 3,4-dioxygenase Y408E mutant bound to DHB
Descriptor: 3,4-DIHYDROXYBENZOIC ACID, FE (III) ION, Protocatechuate 3,4-dioxygenase alpha chain, ...
Authors:Brown, C.K, Ohlendorf, D.H.
Deposit date:2005-01-18
Release date:2005-08-16
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis
Biochemistry, 44, 2005
3PCE
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BU of 3pce by Molmil
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 3-HYDROXYPHENYLACETATE
Descriptor: 3-HYDROXYPHENYLACETATE, BETA-MERCAPTOETHANOL, FE (III) ION, ...
Authors:Elango, N, Orville, A.M, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-04-29
Release date:1998-04-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
Biochemistry, 36, 1997
3PCD
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BU of 3pcd by Molmil
PROTOCATECHUATE 3,4-DIOXYGENASE Y447H MUTANT
Descriptor: BETA-MERCAPTOETHANOL, CARBONATE ION, FE (III) ION, ...
Authors:Orville, A.M, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-11-24
Release date:1998-05-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The axial tyrosinate Fe3+ ligand in protocatechuate 3,4-dioxygenase influences substrate binding and product release: evidence for new reaction cycle intermediates.
Biochemistry, 37, 1998
3PCK
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BU of 3pck by Molmil
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 6-HYDROXYNICOTINIC ACID N-OXIDE
Descriptor: 6-HYDROXYISONICOTINIC ACID N-OXIDE, BETA-MERCAPTOETHANOL, FE (III) ION, ...
Authors:Orville, A.M, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-07-18
Release date:1998-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding.
Biochemistry, 36, 1997
3PCJ
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BU of 3pcj by Molmil
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 2-HYDROXYISONICOTINIC ACID N-OXIDE
Descriptor: 2-HYDROXYISONICOTINIC ACID N-OXIDE, BETA-MERCAPTOETHANOL, FE (III) ION, ...
Authors:Orville, A.M, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-07-18
Release date:1998-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding.
Biochemistry, 36, 1997
3PCL
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BU of 3pcl by Molmil
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 2-HYDROXYISONICOTINIC ACID N-OXIDE AND CYANIDE
Descriptor: 2-HYDROXYISONICOTINIC ACID N-OXIDE, CYANIDE ION, FE (III) ION, ...
Authors:Orville, A.M, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-07-18
Release date:1998-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding.
Biochemistry, 36, 1997
3PCF
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BU of 3pcf by Molmil
STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE COMPLEXED WITH 3-FLURO-4-HYDROXYBENZOATE
Descriptor: 3-FLUORO-4-HYDROXYBENZOIC ACID, BETA-MERCAPTOETHANOL, FE (III) ION, ...
Authors:Orville, A.M, Elango, N, Lipscomb, J.D, Ohlendorf, D.H.
Deposit date:1997-06-27
Release date:1998-01-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
Biochemistry, 36, 1997

 

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