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PDB: 14 results

1KQR
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BU of 1kqr by Molmil
Crystal Structure of the Rhesus Rotavirus VP4 Sialic Acid Binding Domain in Complex with 2-O-methyl-alpha-D-N-acetyl neuraminic acid
Descriptor: 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid, GLYCEROL, SULFATE ION, ...
Authors:Dormitzer, P.R, Sun, Z.-Y.J, Wagner, G, Harrison, S.C.
Deposit date:2002-01-07
Release date:2002-03-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The Rhesus Rotavirus VP4 Sialic Acid Binding Domain has a Galectin Fold with a Novel Carbohydrate Binding Site
Embo J., 21, 2002
2P3K
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Crystal structure of Rhesus rotavirus VP8* at 100K
Descriptor: 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid, GLYCEROL, SULFATE ION, ...
Authors:Blanchard, H.
Deposit date:2007-03-09
Release date:2008-03-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Effects on sialic acid recognition of amino acid mutations in the carbohydrate-binding cleft of the rotavirus spike protein
Glycobiology, 19, 2009
2B4H
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Crystal Structure of the Rhesus Rotavirus VP5 Antigen Domain Dimer
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Outer capsid protein VP4
Authors:Yoder, J.D, Dormitzer, P.R.
Deposit date:2005-09-24
Release date:2006-04-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Alternative intermolecular contacts underlie the rotavirus VP5(*) two- to three-fold rearrangement
Embo J., 25, 2006
2P3I
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Crystal structure of Rhesus Rotavirus VP8* at 295K
Descriptor: 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid, SULFATE ION, VP4
Authors:Blanchard, H.
Deposit date:2007-03-09
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Effects on sialic acid recognition of amino acid mutations in the carbohydrate-binding cleft of the rotavirus spike protein
Glycobiology, 19, 2009
2P3J
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Crystal structure of the Arg101Ala mutant protein of Rhesus rotavirus VP8*
Descriptor: 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid, SULFATE ION, VP4
Authors:Blanchard, H.
Deposit date:2007-03-09
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Effects on sialic acid recognition of amino acid mutations in the carbohydrate-binding cleft of the rotavirus spike protein
Glycobiology, 19, 2009
3TB0
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Crystal structure of Rhesus Rotavirus VP8* in complex with N-Glycolylneuraminic acid
Descriptor: GLYCEROL, Outer capsid protein VP4, PENTAETHYLENE GLYCOL, ...
Authors:Yu, X, Blanchard, H.
Deposit date:2011-08-04
Release date:2012-10-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Rotavirus Strain Preference toward N-Acetyl- or N-Glycolylneuraminic Acid-Containing Receptors.
J.Virol., 86, 2012
2B4I
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Crystal Structure of the Rhesus Rotavirus VP5 Antigen Domain Trimer
Descriptor: Outer capsid protein VP4
Authors:Yoder, J.D, Dormitzer, P.R.
Deposit date:2005-09-24
Release date:2006-04-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Alternative intermolecular contacts underlie the rotavirus VP5(*) two- to three-fold rearrangement
Embo J., 25, 2006
1SLQ
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Crystal structure of the trimeric state of the rhesus rotavirus VP4 membrane interaction domain, VP5CT
Descriptor: VP4
Authors:Dormitzer, P.R, Nason, E.B, Prasad, B.V.V, Harrison, S.C.
Deposit date:2004-03-06
Release date:2004-08-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural rearrangements in the membrane penetration protein of a non-enveloped virus.
Nature, 430, 2004
6WXG
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Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6WXE
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Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6WXF
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Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
8UK2
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The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 5 reconstruction)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Outer capsid glycoprotein VP7, ...
Authors:De Sautu, M, Herrmann, T, Jenni, S, Harrison, S.C.
Deposit date:2023-10-12
Release date:2024-03-27
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (8 Å)
Cite:The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2.
Plos Pathog., 20, 2024
8UK3
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The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 6 reconstruction)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Outer capsid glycoprotein VP7, ...
Authors:De Sautu, M, Herrmann, T, Jenni, S, Harrison, S.C.
Deposit date:2023-10-12
Release date:2024-03-27
Last modified:2024-04-17
Method:ELECTRON MICROSCOPY (8 Å)
Cite:The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2.
Plos Pathog., 20, 2024
1KRI
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BU of 1kri by Molmil
NMR Solution Structures of the Rhesus Rotavirus VP4 Sialic Acid Binding Domain without Ligand
Descriptor: VP4
Authors:Dormitzer, P.R, Sun, Z.-Y.J, Wagner, G, Harrison, S.C.
Deposit date:2002-01-09
Release date:2002-03-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Rhesus Rotavirus VP4 Sialic Acid Binding Domain has a Galectin Fold with a Novel Carbohydrate Binding Site
Embo J., 21, 2002

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