PDB: 73628 resultsInfo pagesStatus searchChemie searchBIRD

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2HQT	Crystal structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA aminoacylation and nuclear export cofactor Arc1p reveal a novel function for an old fold Descriptor: GU4 nucleic-binding protein 1, SULFATE ION Authors: Simader, H, Hothorn, M, Suck, D. Deposit date: 2006-07-19 Release date: 2006-09-05 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA-aminoacylation and nuclear-export cofactor Arc1p reveal a novel function for an old fold. ACTA CRYSTALLOGR.,SECT.D, 62, 2006
4P1Z	Structure of the MID domain from MIWI Descriptor: Piwi-like protein 1 Authors: Cora, E, McCarthy, A.A, Pillai, R.S. Deposit date: 2014-02-28 Release date: 2014-05-07 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The MID-PIWI module of Piwi proteins specifies nucleotide- and strand-biases of piRNAs. Rna, 20, 2014
219D	DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') Authors: Gonzalez, C, James, T.L. Deposit date: 1995-07-25 Release date: 1995-10-15 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints. Biochemistry, 34, 1995
2BCY	Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8MTU) Descriptor: 5'-R(*CP*GP*GP*UP*GP*AP*(MTU)P*AP*AP*GP*GP*G)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3', 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3', ... Authors: Salter, J.D, Wedekind, J.E. Deposit date: 2005-10-19 Release date: 2006-02-14 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Water in the Active Site of an All-RNA Hairpin Ribozyme and Effects of Gua8 Base Variants on the Geometry of Phosphoryl Transfer. Biochemistry, 45, 2006
7L0Z	Spinach variant bound to DFHBI-1T Descriptor: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Truong, L, Trachman, R.J, Ferre-D'Amare, A.R. Deposit date: 2020-12-13 Release date: 2021-05-26 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET. Rna, 27, 2021
2BCZ	Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8I, 2'deoxy A-1) Descriptor: 5'-R(*CP*GP*GP*UP*GP*AP*IP*AP*AP*GP*GP*G)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3', 5'-R(*UP*CP*CP*CP*(DA)P*GP*UP*CP*CP*AP*CP*CP*G)-3'), ... Authors: Salter, J.D, Wedekind, J.E. Deposit date: 2005-10-19 Release date: 2006-02-14 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Water in the Active Site of an All-RNA Hairpin Ribozyme and Effects of Gua8 Base Variants on the Geometry of Phosphoryl Transfer. Biochemistry, 45, 2006
2L3C	Solution structure of ADAR2 dsRBM1 bound to LSL RNA Descriptor: Double-stranded RNA-specific editase 1, RNA (34-MER) Authors: Allain, F, Stefl, R, Oberstrass, F. Deposit date: 2010-09-12 Release date: 2010-10-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove. Cell(Cambridge,Mass.), 143, 2010
2F88	Solution NMR structure of domain 5 from the Pyaiella littoralis (PL) group II intron Descriptor: D5-PL RNA RIBOZYME DOMAIN Authors: Dayie, K.T. Deposit date: 2005-12-02 Release date: 2006-02-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA Rna, 12, 2006
2CFO	Non-Discriminating Glutamyl-tRNA Synthetase from Thermosynechococcus elongatus in Complex with Glu Descriptor: GLUTAMIC ACID, GLUTAMYL-TRNA SYNTHETASE Authors: Schulze, J.O, Nickel, D, Schubert, W.-D, Jahn, D, Heinz, D.W. Deposit date: 2006-02-22 Release date: 2006-08-16 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal Structure of a Non-Discriminating Glutamyl- tRNA Synthetase. J.Mol.Biol., 361, 2006
1Y42	Crystal structure of a C-terminally truncated CYT-18 protein Descriptor: TYROSINE, Tyrosyl-tRNA synthetase, mitochondrial Authors: Paukstelis, P.J, Coon, R, Madabusi, L, Nowakowski, J, Monzingo, A, Robertus, J, Lambowitz, A.M. Deposit date: 2004-11-29 Release date: 2005-02-15 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.95 Å) Cite: A tyrosyl-tRNA synthetase adapted to function in group I intron splicing by acquiring a new RNA binding surface. Mol.Cell, 17, 2005
4CNG	Crystal structure of Sulfolobus acidocaldarius TrmJ in complex with S-adenosyl-L-Homocysteine Descriptor: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SPOU RRNA METHYLASE Authors: Van Laer, B, Somme, J, Roovers, M, Steyaert, J, Droogmans, L, Versees, W. Deposit date: 2014-01-22 Release date: 2014-07-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates. RNA, 20, 2014
4CNF	Crystal structure of Sulfolobus acidocaldarius TrmJ Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Van Laer, B, Somme, J, Roovers, M, Steyaert, J, Droogmans, L, Versees, W. Deposit date: 2014-01-22 Release date: 2014-07-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates. RNA, 20, 2014
1IOO	CRYSTAL STRUCTURE OF NICOTIANA ALATA GEMETOPHYTIC SELF-INCOMPATIBILITY ASSOCIATED SF11-RNASE Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[beta-D-xylopyranose-(1-2)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SF11-RNASE, beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Ida, K, Sato, M, Sakiyama, F, Norioka, S, Yamamoto, M, Kumasaka, T, Yamashita, E. Deposit date: 2001-03-26 Release date: 2002-05-08 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.55 Å) Cite: The 1.55 A resolution structure of Nicotiana alata S(F11)-RNase associated with gametophytic self-incompatibility. J.Mol.Biol., 314, 2001
1EJZ	SOLUTION STRUCTURE OF A HNA-RNA HYBRID Descriptor: DNA (5'-H(*(6HG)P*(6HC)P*(6HG)P*(6HT)P*(6HA)P*(6HG)P*(6HC)P*(6HG))-3'), PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER, RNA (5'-R(*CP*GP*CP*UP*AP*CP*GP*C)-3') Authors: Lescrnier, E, Esnouf, R, Heus, H.A, Hilbers, C.W, Herdewijn, P. Deposit date: 2000-03-06 Release date: 2000-10-23 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a HNA-RNA hybrid. Chem.Biol., 7, 2000
4P2B	Crystal structure of the apo form of the glutaminyl-tRNA synthetase catalytic domain from Toxoplasma gondii. Descriptor: Glutamine aminoacyl-tRNA synthetase, SULFATE ION Authors: van Rooyen, J.M, Belrhali, H, Hakimi, M.A. Deposit date: 2014-03-03 Release date: 2015-03-18 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of the apo form of the glutaminyl-tRNA synthetase catalytic domain from Toxoplasma gondii. To Be Published
2EL7	Crystal structure of Tryptophanyl-tRNA synthetase from Thermus thermophilus Descriptor: PHOSPHATE ION, Tryptophanyl-tRNA synthetase Authors: Yanagisawa, T, Sumida, T, Ishii, R, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-26 Release date: 2008-03-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of Tryptophanyl-tRNA synthetase from Thermus thermophilus To be published
1JIJ	Crystal structure of S. aureus TyrRS in complex with SB-239629 Descriptor: [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETIC ACID, tyrosyl-tRNA synthetase Authors: Qiu, X, Janson, C.A, Smith, W.W, Jarvest, R.L. Deposit date: 2001-07-02 Release date: 2001-10-26 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors. Protein Sci., 10, 2001
1JIL	Crystal structure of S. aureus TyrRS in complex with SB284485 Descriptor: [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID, tyrosyl-tRNA synthetase Authors: Qiu, X, Janson, C.A, Smith, W.W, Jarvest, R.L. Deposit date: 2001-07-02 Release date: 2001-10-26 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors. Protein Sci., 10, 2001
1JIK	Crystal structure of S. aureus TyrRS in complex with SB-243545 Descriptor: [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]-(1,3,4,5-TETRAHYDROXY-4-HYDROXYMETHYL-PIPERIDIN-2-YL)- ACETIC ACID BUTYL ESTER, tyrosyl-tRNA synthetase Authors: Qiu, X, Janson, C.A, Smith, W.W, Jarvest, R.L. Deposit date: 2001-07-02 Release date: 2001-10-26 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors. Protein Sci., 10, 2001
1JII	Crystal structure of S. aureus TyrRS in complex with SB-219383 Descriptor: [2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (2,4,5,8-TETRAHYDROXY-7-OXA-2-AZA-BICYCLO[3.2.1]OCT-3-YL)- ACETIC ACID, tyrosyl-tRNA synthetase Authors: Qiu, X, Janson, C.A, Smith, W.W, Jarvest, R.L. Deposit date: 2001-07-02 Release date: 2001-10-26 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors. Protein Sci., 10, 2001
2L2K	Solution NMR structure of the R/G STEM LOOP RNA-ADAR2 DSRBM2 Complex Descriptor: Adenosine deaminase, RNA (42-MER) Authors: Allain, F.H.-T, Oberstrass, F.C, Stefl, R. Deposit date: 2010-08-20 Release date: 2010-10-27 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove. Cell(Cambridge,Mass.), 143, 2010
3ONP	Crystal Structure of tRNA/rRNA Methyltransferase SpoU from Rhodobacter sphaeroides Descriptor: ACETIC ACID, BETA-MERCAPTOETHANOL, CHLORIDE ION, ... Authors: Kim, Y, Tesar, C, Jedrzejczak, R, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2010-08-30 Release date: 2010-09-08 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structure of tRNA/rRNA Methyltransferase SpoU from Rhodobacter sphaeroides To be Published
4J1G	Leanyer orthobunyavirus nucleoprotein-ssRNA complex Descriptor: Nucleocapsid, RNA (45-MER) Authors: Niu, F, Shaw, N, Wang, Y, Jiao, L, Ding, W, Li, X, Zhu, P, Upur, H, Ouyang, S, Cheng, G, Liu, Z.J. Deposit date: 2013-02-01 Release date: 2013-04-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.789 Å) Cite: Structure of the Leanyer orthobunyavirus nucleoprotein-RNA complex reveals unique architecture for RNA encapsidation. Proc.Natl.Acad.Sci.USA, 110, 2013
1EHZ	The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution Descriptor: MAGNESIUM ION, MANGANESE (II) ION, TRANSFER RNA (PHE) Authors: Shi, H, Moore, P.B. Deposit date: 2000-02-23 Release date: 2000-10-02 Last modified: 2022-12-21 Method: X-RAY DIFFRACTION (1.93 Å) Cite: The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited RNA, 6, 2000
5TGT	Crystal structure of glytamyl-tRNA synthetase GluRS from Pseudomonas aeruginosa Descriptor: GLYCEROL, Glutamate--tRNA ligase, NONAETHYLENE GLYCOL, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2016-09-28 Release date: 2016-10-12 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of glytamyl-tRNA synthetase GluRS from Pseudomonas aeruginosa To Be Published

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